Browse Element(s) Details


OsAffx.30765.1.S1_at

Description tigr:9639.m00047
TID=OsAffx.30765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0148011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g014902/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490Os.28272.2.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_x_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01500NANA11+290960..291905hypothetical protein
LOC_Os11g01510Os.5283.1.S1_at11/1111+294669..300588Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520NANA11+301445..301804hypothetical protein
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30765.1.S1_at--515--8991Chr11:281064..281088 (25 bp)
TGAAGCTCCTTTCCGCAGATCAAGT
LOC_Os11g01480
OsAffx.30765.1.S1_at--995--3671Chr11:281056..281080 (25 bp)
CTTTCCGCAGATCAAGTGCTAGGTA
LOC_Os11g01480
OsAffx.30765.1.S1_at--101--7331Chr11:281041..281065 (25 bp)
GTGCTAGGTATGTAGCTAGAGCTAA
LOC_Os11g01480
OsAffx.30765.1.S1_at--594--1471Chr11:280899..280923 (25 bp)
AGAAGGCCCTCTTAATCTGGATCTC
LOC_Os11g01480
OsAffx.30765.1.S1_at--781--5951Chr11:280837..280861 (25 bp)
GAGAATGCAGCTGGAGGAAACAAGA
LOC_Os11g01480
OsAffx.30765.1.S1_at--401--5571Chr11:280708..280732 (25 bp)
GAAAGATGCACCATCACTAGTCCTA
LOC_Os11g01480
OsAffx.30765.1.S1_at--1149--3551Chr11:280697..280721 (25 bp)
CATCACTAGTCCTACCAGTACTATA
LOC_Os11g01480
OsAffx.30765.1.S1_at--88--10211Chr11:280676..280700 (25 bp)
TATATTGCTGTACTGGCCTGGTGAT
LOC_Os11g01480
OsAffx.30765.1.S1_at--857--4732Chr12:295898..295929 (25 bp)
GCTGTACTGGCCTGGTGATATATCA
LOC_Os12g01490
OsAffx.30765.1.S1_at--203--8432Chr12:295883..295912 (23 bp)
GGCCTGGTGATATATCACTAGCTAG
LOC_Os12g01490
OsAffx.30765.1.S1_at--285--1571Chr11:280639..280663 (25 bp)
AGCTATAGTAGCTAGATATCATATG
LOC_Os11g01480
Target Sequence 
TGAAGCTCCTTTCCGCAGATCAAGTGCTAGGTATGTAGCTAGAGCTAATACCAGCAACCATCCAGATTTTGTCCAAGGCT
CTTCTTCATCTCCAGATGATAATATCATGAACCATCAAAGACCAGTTCTGAAAGAGATGATCTGCAGTGAGGGTAGTAAC
CATCAAGAAGGCCCTCTTAATCTGGATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATGCAGCTG
GAGGAAACAAGAGGAAGATCATGATCATGCTACTGTTGCTATTGGTGCTGATCAAGAAGCAGAGAGTTGTGCTACTGGGC
TCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCACCATCACTAGTCCTACCAGTACTATATTGCTGTA
CTGGCCTGGTGATATATCACTAGCTAGCTATAGTAGCTAGATATCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis