Browse Element(s) Details


Os.56072.1.S1_at

Description gb:AK109211.1
DB_XREF= gi:32994420
TID=Os.56072.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D02, full insert sequence.
FL= gb:AK109211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0155011/11LOB domain protein 12, putative, expressed
LOC_Os11g015507/11LOB domain protein 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g01530Os.12096.3.S1_a_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.4.S1_s_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530OsAffx.30767.1.S1_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.3.S1_x_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01540OsAffx.31540.1.S1_at11/1112+323731..327238hypothetical protein
LOC_Os12g01540OsAffx.31540.2.S1_s_at10/1112+323731..327238hypothetical protein
LOC_Os12g01550Os.56072.1.S1_at11/1112+330023..330715LOB domain protein 12, putative, expressed
LOC_Os12g01560Os.6019.1.S1_at11/1112+336846..340465expressed protein
LOC_Os12g01570Os.52259.1.S1_at3/1112+344084..348145Nodulin-like family protein, expressed
LOC_Os12g01580Os.5268.1.S1_at11/1112+349767..354072MATE efflux family protein, expressed
LOC_Os12g01590Os.27152.1.A1_at11/1112+354612..358271expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0048441biological_processpetal development
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56072.1.S1_at--213--6712Chr12:330208..330232 (25 bp)
GTTCGCCATGGTGCACCGGGTGTTC
LOC_Os12g01550
Os.56072.1.S1_at--560--4352Chr12:330237..330261 (25 bp)
CCAGCAACGTCAGCAAGATGCTGCT
LOC_Os12g01550
Os.56072.1.S1_at--455--7152Chr12:330305..330329 (25 bp)
GTCTACGAGGCCAACGCCCGTATGA
LOC_Os12g01550
Os.56072.1.S1_at--254--3712Chr12:330307..330331 (25 bp)
CTACGAGGCCAACGCCCGTATGAGG
LOC_Os12g01550
Os.56072.1.S1_at--960--1432Chr12:330372..330396 (25 bp)
AGAACCAAGTCTCCCAGCTCCAGAT
LOC_Os12g01550
Os.56072.1.S1_at--680--1512Chr12:330447..330471 (25 bp)
AGCAGCAGCACCAAGATCAAGATGA
LOC_Os12g01550
Os.56072.1.S1_at--176--1692Chr12:330456..330480 (25 bp)
ACCAAGATCAAGATGACCACCACCA
LOC_Os12g01550
Os.56072.1.S1_at--66--3691Chr12:330646..330670 (25 bp)
CTTTGTGCTTGTTGTCTTCTCTTAC
LOC_Os12g01550
Os.56072.1.S1_at--509--7331Chr12:330650..330674 (25 bp)
GTGCTTGTTGTCTTCTCTTACGTAA
LOC_Os12g01550
Os.56072.1.S1_at--489--4931Chr12:330652..330676 (25 bp)
GCTTGTTGTCTTCTCTTACGTAATT
LOC_Os12g01550
Os.56072.1.S1_at--805--10811Chr12:330657..330681 (25 bp)
TTGTCTTCTCTTACGTAATTTCCGG
LOC_Os12g01550
Target Sequence 
GTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCG
ACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTC
CTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCNGCA
GCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGC
TGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGAT
TGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis