Browse Element(s) Details


Os.5268.1.S1_at

Description gb:AK064975.1
DB_XREF= gi:32974993
TID=Os.5268.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B22, full insert sequence.
FL= gb:AK064975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0158011/11MATE efflux family protein, expressed
LOC_Os12g138241/11AGR_C_5039p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01540OsAffx.31540.1.S1_at11/1112+323731..327238hypothetical protein
LOC_Os12g01540OsAffx.31540.2.S1_s_at10/1112+323731..327238hypothetical protein
LOC_Os12g01550Os.56072.1.S1_at11/1112+330023..330715LOB domain protein 12, putative, expressed
LOC_Os12g01560Os.6019.1.S1_at11/1112+336846..340465expressed protein
LOC_Os12g01570Os.52259.1.S1_at3/1112+344084..348145Nodulin-like family protein, expressed
LOC_Os12g01580Os.5268.1.S1_at11/1112+349767..354072MATE efflux family protein, expressed
LOC_Os12g01590Os.27152.1.A1_at11/1112+354612..358271expressed protein
LOC_Os12g01600NANA12+363239..364726retrotransposon protein, putative, unclassified
LOC_Os12g01610NANA12+365357..365983retrotransposon protein, putative, unclassified
LOC_Os12g01620Os.6358.1.S1_at11/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_a_at9/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_x_at5/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.4.S1_x_at4/1112+373636..378324expressed protein
LOC_Os12g01620OsAffx.28618.1.S1_at1/1112+373636..378324expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5268.1.S1_at--1073--10031Chr12:353746..353770 (25 bp)
TAGATTAACATCTTACAGCAAACAT
LOC_Os12g01580
Os.5268.1.S1_at--537--8231Chr12:353776..353800 (25 bp)
GGCAACTACACAGGAAAGGCAGATA
LOC_Os12g01580
Os.5268.1.S1_at--798--1171Chr12:353796..353820 (25 bp)
AGATAGCTGCTGGTCATAGTTCAGA
LOC_Os12g01580
Os.5268.1.S1_at--999--331Chr12:353880..353904 (25 bp)
ATACAGATACTTGTTGGTGGCTCTA
LOC_Os12g01580
Os.5268.1.S1_at--453--7731Chr12:353895..353919 (25 bp)
GGTGGCTCTAGATAGATAGCTCTCT
LOC_Os12g01580
Os.5268.1.S1_at--366--10051Chr12:353907..353931 (25 bp)
TAGATAGCTCTCTCTTTGTTTTGAC
LOC_Os12g01580
Os.5268.1.S1_at--1162--3751Chr12:353918..353942 (25 bp)
CTCTTTGTTTTGACTGCTATAGGAA
LOC_Os12g01580
Os.5268.1.S1_at--1--3631Chr12:353953..353977 (25 bp)
CTTGTACAGTGCTGTCCTATAGAAT
LOC_Os12g01580
Os.5268.1.S1_at--428--2691Chr12:353983..354007 (25 bp)
AAGCTGATAGCTGATGTACACAGGA
LOC_Os12g01580
Os.5268.1.S1_at--475--8172Chr12:354005..354029 (25 bp)
GGAACATTCAGAATCATTCATCCAT
LOC_Os12g01580
Os.5268.1.S1_at--187--131Chr12:354020..354044 (25 bp)
ATTCATCCATGTAAATAAGTCTTTC
LOC_Os12g01580
Target Sequence 
TAGATTAACATCTTACAGCAAACATGTAAAGGCAACTACACAGGAAAGGCAGATAGCTGCTGGTCATAGTTCAGAATAAG
ATTTTCTTTGGGAGATGACAAATGTATGTAGTGATTTGGTTACAAGAAGTACAGATACAGATACTTGTTGGTGGCTCTAG
ATAGATAGCTCTCTCTTTGTTTTGACTGCTATAGGAAGTTGATTCGACTTGTACAGTGCTGTCCTATAGAATGGACAAAG
CTGATAGCTGATGTACACAGGAACATTCAGAATCATTCATCCATGTAAATAAGTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis