Browse Element(s) Details


OsAffx.31540.1.S1_at

Description tigr:9640.m00054
TID=OsAffx.31540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0154011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g01530Os.12096.3.S1_a_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.4.S1_s_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530OsAffx.30767.1.S1_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.3.S1_x_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01540OsAffx.31540.1.S1_at11/1112+323731..327238hypothetical protein
LOC_Os12g01540OsAffx.31540.2.S1_s_at10/1112+323731..327238hypothetical protein
LOC_Os12g01550Os.56072.1.S1_at11/1112+330023..330715LOB domain protein 12, putative, expressed
LOC_Os12g01560Os.6019.1.S1_at11/1112+336846..340465expressed protein
LOC_Os12g01570Os.52259.1.S1_at3/1112+344084..348145Nodulin-like family protein, expressed
LOC_Os12g01580Os.5268.1.S1_at11/1112+349767..354072MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31540.1.S1_at--1032--5211Chr12:324460..324484 (25 bp)
GAATACTCCGATGACCTTCATTTGC
LOC_Os12g01540
OsAffx.31540.1.S1_at--802--5131Chr12:325076..325100 (25 bp)
GCAAATGCTCTTGTGCGTATTGATC
LOC_Os12g01540
OsAffx.31540.1.S1_at--548--6871Chr12:325092..325116 (25 bp)
GTATTGATCCCAACCACCCAGAATA
LOC_Os12g01540
OsAffx.31540.1.S1_at--671--151Chr12:325192..325215 (24 bp)
ATTATCCGCACTGCGTTCTGGTGAA
LOC_Os12g01540
OsAffx.31540.1.S1_at--36--6731Chr12:326917..326936 (20 bp)
GTTCTGGTGAACATTTTCGTGCAAT
LOC_Os12g01540
OsAffx.31540.1.S1_at--669--10611Chr12:326927..326951 (25 bp)
TTCGTGCAATGGGAATTTTGATCCT
LOC_Os12g01540
OsAffx.31540.1.S1_at--662--8211Chr12:326938..326962 (25 bp)
GGAATTTTGATCCTGATGTCGTGGA
LOC_Os12g01540
OsAffx.31540.1.S1_at--301--812Chr12:326962..326986 (25 bp)
ATGGGTATTTGGGATCCTGAGACAA
LOC_Os12g01540
OsAffx.31540.1.S1_at--648--6372Chr12:326974..326998 (25 bp)
GATCCTGAGACAATGAGGGTATCAC
LOC_Os12g01540
OsAffx.31540.1.S1_at--236--711Chr12:326986..327010 (25 bp)
ATGAGGGTATCACTTGCCTCTTCTA
LOC_Os12g01540
OsAffx.31540.1.S1_at--216--9192Chr12:327000..327024 (25 bp)
TGCCTCTTCTACTGCTGTTTCACTG
LOC_Os12g01540
Target Sequence 
GAATACTCCGATGACCTTCATTTGCAAGTATCCAATGAAGAATGGCTAACTTTTGCAAAGGACTCTCTTGATAATGGTTT
TTACACCATTGCTTCCAAGGCTTTTGCAAATGCTCTTGTGCGTATTGATCCCAACCACCCAGAATACTTGGACTCAACCA
ATTCTATTCTGAAGAAAGATAAGATCAATGATATAAGTGGACTCCAAAACTTGGCCAAGTCATTATCCGCACTGCGTTCT
GGTGAACATTTTCGTGCAATGGGAATTTTGATCCTGATGTCGTGGATGGGTATTTGGGATCCTGAGACAATGAGGGTATC
ACTTGCCTCTTCTACTGCTGTTTCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis