Browse Element(s) Details


Os.12096.3.S1_a_at

Description gb:AF519570.1
DB_XREF= gi:21686525
GEN=Fer1
TID=Os.12096.3
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12096 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ferritin (Fer1) mRNA, complete cds.
PROD=ferritin
FL= gb:AF519570.1 gb:AK059354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0153011/11Ferritin 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01490Os.18448.1.S1_s_at11/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490Os.18448.1.S1_at10/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490OsAffx.30765.1.S1_at2/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g01530Os.12096.3.S1_a_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.4.S1_s_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530OsAffx.30767.1.S1_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.3.S1_x_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01540OsAffx.31540.1.S1_at11/1112+323731..327238hypothetical protein
LOC_Os12g01540OsAffx.31540.2.S1_s_at10/1112+323731..327238hypothetical protein
LOC_Os12g01550Os.56072.1.S1_at11/1112+330023..330715LOB domain protein 12, putative, expressed
LOC_Os12g01560Os.6019.1.S1_at11/1112+336846..340465expressed protein
LOC_Os12g01570Os.52259.1.S1_at3/1112+344084..348145Nodulin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006826biological_processiron ion transport
GO:0006879biological_processiron ion homeostasis
GO:0009617biological_processresponse to bacteria
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010039biological_processresponse to iron ion
GO:0042542biological_processresponse to hydrogen peroxide
GO:0009507cellular_componentchloroplast
GO:0005506molecular_functioniron ion binding
GO:0008199molecular_functionferric iron binding
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12096.3.S1_a_at--903--10131Chr12:320438..320459 (22 bp)
TATGCTATGGAGTTGGCCTTGGCTC
LOC_Os12g01530
Os.12096.3.S1_a_at--1083--9071Chr12:320436..320459 (24 bp)
TGCTATGGAGTTGGCCTTGGCTCTC
LOC_Os12g01530
Os.12096.3.S1_a_at--49--4452Chr11:20583038..20583057 (20 bp)
GCCTTGGCTCTCGAAAAGCTTGTAA
NONE
Os.12096.3.S1_a_at--474--3612Chr11:20583038..20583059 (22 bp)
CTTGGCTCTCGAAAAGCTTGTAAAT
NONE
Os.12096.3.S1_a_at--400--8292Chr11:20583038..20583059 (22 bp)
GGCTCTCGAAAAGCTTGTAAATGAG
NONE
Os.12096.3.S1_a_at--180--5432Chr12:319715..319739 (25 bp)
GAACCAACCAATTTGGTCATGAACT
LOC_Os12g01530
Os.12096.3.S1_a_at--846--3112Chr12:319706..319730 (25 bp)
AATTTGGTCATGAACTTCCCCCTGT
LOC_Os12g01530
Os.12096.3.S1_a_at--1070--10072Chr12:319678..319702 (25 bp)
TAGGTCAGTAGAGCTTCAGAATCAT
LOC_Os12g01530
Os.12096.3.S1_a_at--1036--1352Chr12:319669..319693 (25 bp)
AGAGCTTCAGAATCATGTGTATGTC
LOC_Os12g01530
Os.12096.3.S1_a_at--731--7252Chr12:319640..319664 (25 bp)
GTCCTCGCAGAAAAGGAACATGGCG
LOC_Os12g01530
Os.12096.3.S1_a_at--76--7412Chr12:319594..319618 (25 bp)
GTGATATTGTGGCTATGCATGGAGT
LOC_Os12g01530
Target Sequence 
TATGCTATGGAGTTGGCCTTGGCTCTCGAAAAGCTTGTAAATGAGAAGTTGCACAACCTGCACAGTGTGGCATCAAGGTG
CAATGATCCACAGCTGACCGACTTCGTTGAGAGCGAATTCCTTGAGGAGCANGTTGAAGCCATCAAGAAGATCTCTGAGT
ATGTCGCCCAGCTGAGAAGAGTGNGAAAGGGGCATGGGGTGTGGCACTTTGATCAGAAGCTGCTTGAGGAAGAAGCTTGA
ATGGAGGAGACTGTGTGAAGGGCAGTAGTAGGTTTCGTTTCTTCCATCCATGGGATCATGCAGCTAAAGAAAGAAAATAA
GTCGAGTCTGTGTATTCATCAAATTAAGCACGCAGTAGCAATGGAGTGAATGAACCAACCAATTTGGTCATGAACTTCCC
CCTGTGTCTAGGTCAGTAGAGCTTCAGAATCATGTGTATGTCGCGCGTCCTCGCAGAAAAGGAACATGGCGCCGCTGGCT
GTAGCGATACTTGTGATATTGTGGCTATGCATGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12096.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis