Browse Element(s) Details


Os.18448.1.S1_at

Description gb:AK107297.1
DB_XREF= gi:32992506
TID=Os.18448.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C05, full insert sequence.
FL= gb:AK107297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0149010/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g150301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed
LOC_Os12g01490Os.18448.1.S1_s_at11/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490Os.18448.1.S1_at10/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490OsAffx.30765.1.S1_at2/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g01530Os.12096.3.S1_a_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.4.S1_s_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530OsAffx.30767.1.S1_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.3.S1_x_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18448.1.S1_at--277--2771Chr12:296083..296107 (25 bp)
AAGAGAGAATTGATCAGCTGGAGGA
LOC_Os12g01490
Os.18448.1.S1_at--87--10211Chr12:295916..295940 (25 bp)
TATATTGCTGTGCTGTACTGGTCTG
LOC_Os12g01490
Os.18448.1.S1_at--578--71Chr12:295913..295937 (25 bp)
ATTGCTGTGCTGTACTGGTCTGGTC
LOC_Os12g01490
Os.18448.1.S1_at--168--4731Chr12:295905..295929 (25 bp)
GCTGTACTGGTCTGGTCCCTGGTGA
LOC_Os12g01490
Os.18448.1.S1_at--124--3911Chr12:295894..295918 (25 bp)
CTGGTCCCTGGTGATATATCAGATA
LOC_Os12g01490
Os.18448.1.S1_at--829--3711Chr12:295866..295890 (25 bp)
CTAGCTAGATCATATGTCATTGTGG
LOC_Os12g01490
Os.18448.1.S1_at--324--4871Chr12:295863..295887 (25 bp)
GCTAGATCATATGTCATTGTGGATG
LOC_Os12g01490
Os.18448.1.S1_at--699--2251Chr12:295706..295730 (25 bp)
AAATTTATTGTATTTCTGTTGCACA
LOC_Os12g01490
Os.18448.1.S1_at--151--10812Chr12:295699..295723 (25 bp)
TTGTATTTCTGTTGCACATTATCTT
LOC_Os12g01490
Os.18448.1.S1_at--538--131Chr12:295662..295686 (25 bp)
ATTAATATAGCTGATCCCGGTTGAT
LOC_Os12g01490
Os.18448.1.S1_at--126--9751Chr12:295660..295684 (25 bp)
TAATATAGCTGATCCCGGTTGATCT
NONE
Target Sequence 
AAGAGAGAATTGATCAGCTGGAGGAAANANGAGGAAGATCATGATCATNCTACTNTTGCTATTGGTGNTGATCAAGAAGC
AGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCANCATNANNAGTCCT
ACCANTACTATATTGCTGTGCTGTACTGGTCTGGTCCCTGGTGATATATCAGATATCNCTAGCTAGATCATATGTCATTG
TGGATGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGACTACACT
GTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAGAGGAAGATAAACATAAATTTATTGTATTTCTGTTGC
ACATTATCTTNCGTATCTTTTGATTAATATAGCTGATCCCGGTTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis