Browse Element(s) Details


Os.17304.1.S1_at

Description gb:AK070979.1
DB_XREF= gi:32981002
TID=Os.17304.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073D05, full insert sequence.
FL= gb:AK070979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0151010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed
LOC_Os12g01490Os.18448.1.S1_s_at11/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490Os.18448.1.S1_at10/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490OsAffx.30765.1.S1_at2/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g01530Os.12096.3.S1_a_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.4.S1_s_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530OsAffx.30767.1.S1_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.3.S1_x_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01540OsAffx.31540.1.S1_at11/1112+323731..327238hypothetical protein
LOC_Os12g01540OsAffx.31540.2.S1_s_at10/1112+323731..327238hypothetical protein
LOC_Os12g01550Os.56072.1.S1_at11/1112+330023..330715LOB domain protein 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17304.1.S1_at--917--10531Chr12:305847..305871 (25 bp)
TTCAGTGTGTTTTCTCTTCTTTCTG
LOC_Os12g01510
Os.17304.1.S1_at--423--6811Chr12:305839..305863 (25 bp)
GTTTTCTCTTCTTTCTGGTATCATA
LOC_Os12g01510
Os.17304.1.S1_at--97--9571Chr12:305833..305857 (25 bp)
TCTTCTTTCTGGTATCATACACCCT
LOC_Os12g01510
Os.17304.1.S1_at--409--411Chr12:305820..305844 (25 bp)
ATCATACACCCTCCGTCAAATAAAA
LOC_Os12g01510
Os.17304.1.S1_at--517--1193Chr02:4395257..4395469 (25 bp)
AGTATAACGAATCTGGAATATCTCT
NONE
Os.17304.1.S1_at--738--8211Chr12:305720..305744 (25 bp)
GGAATATCTCTGTCTAGATTTATTG
LOC_Os12g01510
Os.17304.1.S1_at--839--5231Chr12:305690..305714 (25 bp)
GAATACGTCACATCTAGTGCTAGAT
LOC_Os12g01510
Os.17304.1.S1_at--503--3091Chr12:305546..305570 (25 bp)
AATACTAGCATTTAACCGATATGTA
LOC_Os12g01510
Os.17304.1.S1_at--986--2631Chr12:305474..305498 (25 bp)
AACCATATATGTATGACGCTGGCTA
LOC_Os12g01510
Os.17304.1.S1_at--1147--1251Chr12:305329..305353 (25 bp)
AGATTATGATTTAGAGCATGCATGC
LOC_Os12g01510
Os.17304.1.S1_at--341--3091NONE
AATAAGACGGCCTATTGCTTGTGTT
NONE
Target Sequence 
TTCAGTGTGTTTTCTCTTCTTTCTGGTATCATACACCCTCCGTCAAATAAAAAACCAACATAGTACACATCATAATACAA
CGAAACTAAACATATTTGGATATGACATATTATAGTATAACGAATCTGGAATATCTCTGTCTAGATTTATTGTACTAGAA
TACGTCACATCTAGTGCTAGATTTATTTTTTTGGACGGAGGGTGTAGTAGGAAATTAGGAATACTCTGCAACATATTTTC
ATTTTTTTTTTCTTTGCAGAAATGAGTTTGCAGGTTTGTAAAGGTGAGAAAAAAAGGAAATAAATACTAGCATTTAACCG
ATATGTAATCTTATCTTTGTGTTGTGNGTATTTGAAGTACTATATACTACCTCCAACCATATATGTATGACGCTGGCTAG
TATAAATTTGAACTAGCCAACATNTTGTAAAAGAAACTGGAGGGAGTAACTTATTAGTACCAATAAGCATGTTAGTGAAG
TTATTTAAGTAGATAATGACNCAANGTAAACGTAATTTCAGATTATGATTTAGAGCATGCATGCGACAATGTAAGGCATG
GTTTTTATAATAAGACGGCCTATTGCTTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis