Browse Element(s) Details


Os.11394.1.S1_at

Description gb:AK072914.1
DB_XREF= gi:32982937
TID=Os.11394.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150I16, full insert sequence.
FL= gb:AK072914.1 gb:AK099132.1 gb:AK062121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0144911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01400OsAffx.19445.1.S1_at11/1112+259581..260030EF hand family protein
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed
LOC_Os12g01490Os.18448.1.S1_s_at11/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490Os.18448.1.S1_at10/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490OsAffx.30765.1.S1_at2/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11394.1.S1_at--274--10291Chr12:272919..272943 (25 bp)
TTTGCCGGAGGCTTTGACGAGGAAA
LOC_Os12g01449
Os.11394.1.S1_at--1087--6251Chr12:272863..272887 (25 bp)
GATGTGTACAACACAGACATCTGCT
LOC_Os12g01449
Os.11394.1.S1_at--513--9092Chr12:272842..272866 (25 bp)
TGCTCCACAAATTTCATAGCTCTAA
LOC_Os12g01449
Os.11394.1.S1_at--73--311Chr12:272827..272851 (25 bp)
ATAGCTCTAACCATGCATGCTGCAT
LOC_Os12g01449
Os.11394.1.S1_at--1142--631Chr12:272815..272839 (25 bp)
ATGCATGCTGCATTCCACAGTTGAC
LOC_Os12g01449
Os.11394.1.S1_at--1057--4751Chr12:272809..272833 (25 bp)
GCTGCATTCCACAGTTGACTGGTTT
LOC_Os12g01449
Os.11394.1.S1_at--451--8951Chr12:272794..272818 (25 bp)
TGACTGGTTTATTTTCTTTGTTGAA
LOC_Os12g01449
Os.11394.1.S1_at--272--9851Chr12:272718..272742 (25 bp)
TAAATCCCAATATGGCAGGAAAGGA
LOC_Os12g01449
Os.11394.1.S1_at--311--7991Chr12:272696..272720 (25 bp)
GGATGATTAAGTGTACAGACGATGA
LOC_Os12g01449
Os.11394.1.S1_at--1153--4031Chr12:272677..272701 (25 bp)
CGATGAATACATGCATACTAGATTA
LOC_Os12g01449
Os.11394.1.S1_at--674--9831Chr12:272636..272660 (25 bp)
TAAAGGTTGCAAGAGCGCATTTTTA
LOC_Os12g01449
Target Sequence 
TTTGCCGGAGGCTTTGACGAGGAAAGCATGAAGGCGTTTGAAGAGCTAAGAAGCAAGATGTGTACAACACAGACATCTGC
TCCACAAATTTCATAGCTCTAACCATGCATGCTGCATTCCACAGTTGACTGGTTTATTTTCTTTGTTGAAACTTGAAAGG
CAAGATTAATTGAGTGGCTAAAAAGTAGAAAAATACAAGTGTAAATCCCAATATGGCAGGAAAGGATGATTAAGTGTACA
GACGATGAATACATGCATACTAGATTATGTATTTCTTTGTANTTAAAGGTTGCAAGAGCGCATTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis