Browse Element(s) Details


OsAffx.31539.1.S1_at

Description tigr:9640.m00042
TID=OsAffx.31539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ammonium Transporter Family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0142011/11Ammonium Transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01400OsAffx.19445.1.S1_at11/1112+259581..260030EF hand family protein
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31539.1.S1_at--632--3891Chr12:265077..265101 (25 bp)
CTGGTGTGCATAACTCCGGCGGCAG
LOC_Os12g01420
OsAffx.31539.1.S1_at--232--5071Chr12:265035..265059 (25 bp)
GCAGCTCTGCTAATGGGCGTCGCGT
LOC_Os12g01420
OsAffx.31539.1.S1_at--205--8151Chr12:265007..265031 (25 bp)
GGACACTGCCATGCTACACCATGAA
LOC_Os12g01420
OsAffx.31539.1.S1_at--289--1831Chr12:264983..265007 (25 bp)
ACGCCGCCATGTCGTTCAAGGTAGA
LOC_Os12g01420
OsAffx.31539.1.S1_at--777--10031Chr12:264962..264986 (25 bp)
TAGACGACACGCTGGGCATCCTGCA
LOC_Os12g01420
OsAffx.31539.1.S1_at--376--9471Chr12:264875..264899 (25 bp)
TCTGTGACATGTTCCTTCCGGTGAC
LOC_Os12g01420
OsAffx.31539.1.S1_at--674--4931Chr12:264783..264807 (25 bp)
GCATTGTTCGTTGCCGCATGGAACG
LOC_Os12g01420
OsAffx.31539.1.S1_at--1058--7251Chr12:264748..264772 (25 bp)
GTCCATCATCTTGGTCGTCGTCAGG
LOC_Os12g01420
OsAffx.31539.1.S1_at--644--9331Chr12:264686..264710 (25 bp)
TCGCCGGAGACATTGCCGTACATGG
LOC_Os12g01420
OsAffx.31539.1.S1_at--899--1551Chr12:264655..264679 (25 bp)
AGCTTATTATTTTTCGAGTGGCACC
LOC_Os12g01420
OsAffx.31539.1.S1_at--290--6131Chr12:264640..264664 (25 bp)
GAGTGGCACCAATTGTAGTTTAAGC
LOC_Os12g01420
Target Sequence 
CTGGTGTGCATAACTCCGGCGGCAGGGCTGGTGCAGGGGTGGGCAGCTCTGCTAATGGGCGTCGCGTCGGGGACACTGCC
ATGCTACACCATGAACGCCGCCATGTCGTTCAAGGTAGACGACACGCTGGGCATCCTGCACACCCACGCGGTGTCCGGTG
TTCTGGGCGGCGTCCTCACCGGCGTTTTCGCGCACCCTACTCTCTGTGACATGTTCCTTCCGGTGACCGGCTCAAGGGGC
CTCGTCTACGGCGTCCGCGCCGGCGGGGTGCAGGTGTTGAAGCAGGTCGCCGCCGCATTGTTCGTTGCCGCATGGAACGT
GGCCGCCACGTCCATCATCTTGGTCGTCGTCAGGGCGTTCGTGCCGCTGAGGATGACGGAAGATGAGCTGCTCGCCGGAG
ACATTGCCGTACATGGGGAACAAGCTTATTATTTTTCGAGTGGCACCAATTGTAGTTTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis