Browse Element(s) Details


Os.53113.1.A1_at

Description gb:AK070873.1
DB_XREF= gi:32980896
TID=Os.53113.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023071K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023071K13, full insert sequence.
FL= gb:AK070873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0128011/11Glycosyltransferase family 43 protein, expressed
LOC_Os12g014301/11ribosomal protein L10 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01250Os.9707.1.S1_at10/114+178337..187650Amidase family protein, expressed
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01270NANA4+198241..199027hypothetical protein
LOC_Os04g01280Os.53113.1.A1_at11/114+206674..209979Glycosyltransferase family 43 protein, expressed
LOC_Os04g01290Os.6368.1.S1_at11/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01290Os.10209.2.S1_at1/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01300Os.9231.1.S1_at11/114+217398..220560rhomboid protein, putative, expressed
LOC_Os04g01310Os.53673.1.S1_at10/114+231089..233845D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53113.1.A1_at--532--8491Chr04:208640..208664 (25 bp)
TGGCATGTGCCATTCGGATCTGAAA
LOC_Os04g01280
Os.53113.1.A1_at--662--5571Chr04:208661..208685 (25 bp)
GAAAGTGTTGTCTATCCTAAAGGAT
LOC_Os04g01280
Os.53113.1.A1_at--446--871Chr04:208684..208708 (25 bp)
ATGGCGGGTTGCTACAGATCTGGAT
LOC_Os04g01280
Os.53113.1.A1_at--863--6891Chr04:208729..208753 (25 bp)
GTATCACCAGCTATGTTCACCAAAG
LOC_Os04g01280
Os.53113.1.A1_at--536--2851Chr04:208751..208772 (22 bp)
AAGTGCTAACTCCTTTGACAGGCAT
LOC_Os04g01280
Os.53113.1.A1_at--1049--9591Chr04:209624..209648 (25 bp)
TCATAATTGCTTGGACGGCCTCTAT
LOC_Os04g01280
Os.53113.1.A1_at--858--3292Chr04:209650..209674 (25 bp)
CAAATCCAATCCAAAAACCTTCTCT
LOC_Os04g01280
Os.53113.1.A1_at--896--2631Chr04:209665..209689 (25 bp)
AACCTTCTCTTTGCCGTGTATATGT
LOC_Os04g01280
Os.53113.1.A1_at--103--10311Chr04:209777..209801 (25 bp)
TTTCTTCTGGCCTGTGCAGATTACT
LOC_Os04g01280
Os.53113.1.A1_at--638--6531Chr04:209795..209819 (25 bp)
GATTACTGCCTAAATGGACCTTTCC
LOC_Os04g01280
Os.53113.1.A1_at--222--5651Chr04:209852..209876 (25 bp)
GACAGCATTGTCTCGTTTATTCGTG
LOC_Os04g01280
Target Sequence 
TGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCC
TCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAACTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGC
AAGTGTGCAGAGACATTTATACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGT
AGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGCCGTGTATATGTTCATGTTGT
AGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACGGCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTT
TCTTCTGGCCTGTGCAGATTACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCA
TTGTCTCGTTTATTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53113.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis