Browse Element(s) Details


Os.9231.1.S1_at

Description gb:AK073274.1
DB_XREF= gi:32983297
TID=Os.9231.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029B20, full insert sequence.
FL= gb:AK061755.1 gb:AK073274.1 gb:AK066103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0130011/11rhomboid protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01270NANA4+198241..199027hypothetical protein
LOC_Os04g01280Os.53113.1.A1_at11/114+206674..209979Glycosyltransferase family 43 protein, expressed
LOC_Os04g01290Os.6368.1.S1_at11/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01290Os.10209.2.S1_at1/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01300Os.9231.1.S1_at11/114+217398..220560rhomboid protein, putative, expressed
LOC_Os04g01310Os.53673.1.S1_at10/114+231089..233845D-mannose binding lectin family protein, expressed
LOC_Os04g01320Os.54385.1.S1_at10/114+237075..239769D-mannose binding lectin family protein, expressed
LOC_Os04g01330Os.56956.1.S1_at11/114+241000..241928expressed protein
LOC_Os04g01340OsAffx.10458.1.S1_at7/114+242538..245183retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9231.1.S1_at--816--6671Chr04:218091..218115 (25 bp)
GTTGCTAACCTCTTTGATCGGATGC
LOC_Os04g01300
Os.9231.1.S1_at--767--1011Chr04:218058..218082 (25 bp)
AGGTCTAGACCTTCTGAACTGGCCC
LOC_Os04g01300
Os.9231.1.S1_at--633--8151Chr04:217791..217815 (25 bp)
GGAAAGGTTGGCTGCAGACCATGCA
LOC_Os04g01300
Os.9231.1.S1_at--260--8651Chr04:217744..217768 (25 bp)
TGGGCCATTCCACAGCAGAAGATTA
LOC_Os04g01300
Os.9231.1.S1_at--991--6551Chr04:217724..217748 (25 bp)
GATTAATATAGCTCGTCCACTGTCA
LOC_Os04g01300
Os.9231.1.S1_at--628--1951Chr04:217706..217730 (25 bp)
ACTGTCAACACACCATACTGCGATA
LOC_Os04g01300
Os.9231.1.S1_at--1100--311Chr04:217692..217716 (25 bp)
ATACTGCGATAGGAGCCACGGCCAC
LOC_Os04g01300
Os.9231.1.S1_at--377--1751Chr04:217669..217693 (25 bp)
ACCTGCCTATGTGCTTTGTAACACC
LOC_Os04g01300
Os.9231.1.S1_at--849--6311Chr04:217515..217539 (25 bp)
GATGACATCCCCATCCAGATGTAAT
LOC_Os04g01300
Os.9231.1.S1_at--173--10551Chr04:217410..217434 (25 bp)
TTCATATCAGCAAGGGACGCCCATA
LOC_Os04g01300
Os.9231.1.S1_at--1044--2871Chr04:217399..217423 (25 bp)
AAGGGACGCCCATATCGGCTATCAA
LOC_Os04g01300
Target Sequence 
GTTGCTAACCTCTTTGATCGGATGCTGTGTGCAAGGTCTAGACCTTCTGAACTGGCCCTCCCAGTCTCAGATCCTGCAAA
GGCATCGAGAAGAAGGGAGCGTGGCGAAAGGGTTCTTGAGGAAAGGTTGGCTGCAGACCATGCAGCAGACACGGAAGCCC
CAGCTNTGGGCCATTCCACAGCAGAAGATTAATATAGCTCGTCCACTGTCAACACACCATACTGCGATAGGAGCCACGGC
CACCTGCCTATGTGCTTTGTAACACCGAAAATTTGTGTTCTGGAGAATGCAATTCAGTTTACAATGGACCAATGATATGA
TATTTTACTCTCTTTTCTTATTATTTATTGGTTAAATTCTGTTGTAGTTGATTACAGTGAAAAAAGAAAGAAAAGGATGA
CATCCCCATCCAGATGTAATGTAGAAAGAATTGAGACTTTGTGAGGATTGCTGTTGAGAATATTTTCCAAGTGAACTGTG
ACTTTGAGTCAATAATAGGGTTCATATCAGCAAGGGACGCCCATATCGGCTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis