Browse Element(s) Details


Os.54385.1.S1_at

Description gb:AK103833.1
DB_XREF= gi:32989042
TID=Os.54385.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148B20, full insert sequence.
FL= gb:AK103833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0132010/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01290Os.6368.1.S1_at11/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01290Os.10209.2.S1_at1/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01300Os.9231.1.S1_at11/114+217398..220560rhomboid protein, putative, expressed
LOC_Os04g01310Os.53673.1.S1_at10/114+231089..233845D-mannose binding lectin family protein, expressed
LOC_Os04g01320Os.54385.1.S1_at10/114+237075..239769D-mannose binding lectin family protein, expressed
LOC_Os04g01330Os.56956.1.S1_at11/114+241000..241928expressed protein
LOC_Os04g01340OsAffx.10458.1.S1_at7/114+242538..245183retrotransposon protein, putative, LINE subclass
LOC_Os04g01354Os.53952.1.S1_at11/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.32197.1.A1_x_at5/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.7027.1.S1_at3/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01370OsAffx.11259.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.22850.1.S1_x_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.20615.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.30486.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54385.1.S1_at--921--10171Chr04:237557..237581 (25 bp)
TATATCTGGACGAAGGAATTCACCT
LOC_Os04g01320
Os.54385.1.S1_at--968--2011Chr04:237523..237547 (25 bp)
ACTAGTGATAATTACCATGTTTCGT
LOC_Os04g01320
Os.54385.1.S1_at--812--4331Chr04:237509..237533 (25 bp)
CCATGTTTCGTATTTCCCTGTGCAA
LOC_Os04g01320
Os.54385.1.S1_at--476--7351NONE
GTGCAAGCCATCGACAAGCTACACG
NONE
Os.54385.1.S1_at--800--6291Chr04:237367..237391 (25 bp)
GATGATGAGCATGATCGACCGACAA
LOC_Os04g01320
Os.54385.1.S1_at--1080--10611Chr04:237330..237354 (25 bp)
TTCGGGTCCTTGAGGGTATGCAAGA
LOC_Os04g01320
Os.54385.1.S1_at--967--3271Chr04:237264..237288 (25 bp)
CAAAATGCTCTGATGTGGGTTCAAT
LOC_Os04g01320
Os.54385.1.S1_at--957--351Chr04:237199..237223 (25 bp)
ATAATTTATGATGCTAACGTGTGGC
LOC_Os04g01320
Os.54385.1.S1_at--988--10431Chr04:237128..237152 (25 bp)
TTATGGTATGGTGTATGTTTTCCCC
LOC_Os04g01320
Os.54385.1.S1_at--272--4171Chr04:237104..237128 (25 bp)
CCCGTTCTGTTTGTAATGATTACCT
LOC_Os04g01320
Os.54385.1.S1_at--954--6551Chr04:237087..237111 (25 bp)
GATTACCTATTATATTCTGATGAGC
LOC_Os04g01320
Target Sequence 
TATATCTGGACGAAGGAATTCACCTAATGAATACACTAGTGATAATTACCATGTTTCGTATTTCCCTGTGCAAGCCATCG
ACAAGCTACACGAGGGAGATGTGCGGAATTTGGTGGATCCACAATTATGTGATGATTTTAGTTTGGAAGAGGCTGAAAGG
GTTTGCAAGGTTGCATGTTGGTGCATCCAAGATGATGAGCATGATCGACCGACAATGAGTGAAGTGGTTCGGGTCCTTGA
GGGTATGCAAGAGCTTGAAATGCCCCCAATGCCAAGATTACTTGCAGCTTTAACAAAATGCTCTGATGTGGGTTCAATAT
AATAGTTCATAAATACTTGTATTTCACTATATTTCGGAATAATTTATGATGCTAACGTGTGGCAGGAGAAATTAATAGAG
GAAGTCAAACCTGCAAATATTGTTGAATTTTATGGTATGGTGTATGTTTTCCCCCCGTTCTGTTTGTAATGATTACCTAT
TATATTCTGATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis