Browse Element(s) Details


Os.53673.1.S1_at

Description gb:AK073860.1
DB_XREF= gi:32983883
TID=Os.53673.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072E15, full insert sequence.
FL= gb:AK073860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0131010/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01280Os.53113.1.A1_at11/114+206674..209979Glycosyltransferase family 43 protein, expressed
LOC_Os04g01290Os.6368.1.S1_at11/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01290Os.10209.2.S1_at1/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01300Os.9231.1.S1_at11/114+217398..220560rhomboid protein, putative, expressed
LOC_Os04g01310Os.53673.1.S1_at10/114+231089..233845D-mannose binding lectin family protein, expressed
LOC_Os04g01320Os.54385.1.S1_at10/114+237075..239769D-mannose binding lectin family protein, expressed
LOC_Os04g01330Os.56956.1.S1_at11/114+241000..241928expressed protein
LOC_Os04g01340OsAffx.10458.1.S1_at7/114+242538..245183retrotransposon protein, putative, LINE subclass
LOC_Os04g01354Os.53952.1.S1_at11/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.32197.1.A1_x_at5/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.7027.1.S1_at3/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53673.1.S1_at--81--1531Chr04:231644..231668 (25 bp)
AGCAGAGTTCTGACTACATTTAGAG
LOC_Os04g01310
Os.53673.1.S1_at--1097--1091Chr04:231595..231619 (25 bp)
AGTGGATTAGTGGTGTCGCAATTAC
LOC_Os04g01310
Os.53673.1.S1_at--348--7411NONE
GTGTTGCTAGAGGTCATATCAGGAA
NONE
Os.53673.1.S1_at--285--5151Chr04:231487..231511 (25 bp)
GCAACAGTCATCATGCTGCTTACTT
LOC_Os04g01310
Os.53673.1.S1_at--1016--7331Chr04:231425..231449 (25 bp)
GTGCAGAGTTTGGTGGATCCACGTT
LOC_Os04g01310
Os.53673.1.S1_at--21--6371Chr04:231410..231434 (25 bp)
GATCCACGTTTGAGTGGCGACTTCA
LOC_Os04g01310
Os.53673.1.S1_at--1049--7751Chr04:231300..231324 (25 bp)
GGTCCTGGTTCTTGAAGGTCTACAG
LOC_Os04g01310
Os.53673.1.S1_at--308--9851Chr04:231247..231271 (25 bp)
TACTTGCAGCTATAACGAGATCTTC
LOC_Os04g01310
Os.53673.1.S1_at--729--1871Chr04:231233..231257 (25 bp)
ACGAGATCTTCTAATGTAGCTGAGA
LOC_Os04g01310
Os.53673.1.S1_at--94--7011Chr04:231172..231196 (25 bp)
GTACTGTATAATGCTACTCTTGTAT
LOC_Os04g01310
Os.53673.1.S1_at--516--9791Chr04:231114..231138 (25 bp)
TAAGCAACGGTTGTCGATGCACAGT
LOC_Os04g01310
Target Sequence 
AGCAGAGTTCTGACTACATTTAGAGGAACAGTTGGATATCTTGCCCCGGAGTGGATTAGTGGTGTCGCAATTACACCAAA
AGTTGATGTTTACAGCTATGGTATGGTGTTGCTAGAGGTCATATCAGGAATGAGAAGTTTACCTAATGTACACAGTAGCA
ACAGTCATCATGCTGCTTACTTCCCTGTGCAAGCCATCAGCAAGCTTCATGAGGGAGATGTGCAGAGTTTGGTGGATCCA
CGTTTGAGTGGCGACTTCAATTTAGAAGAGGCTGAAAGGGTTTGCAAAGTTGCTTGTTGGTGCATTCAAGATAATGAGTT
CGATCGGCCGACAATGGGTGAAGTGGTCCTGGTTCTTGAAGGTCTACAGGAGTTTGATATGCCCCCTATGCCAAGACTAC
TTGCAGCTATAACGAGATCTTCTAATGTAGCTGAGATGTAAAAACAATTCAAAATCCTCTAATTGCTAAAATGTACTGTA
TAATGCTACTCTTGTATTTACATTTTTTTTTCTTTAATGACAGACTTTTGTAAGCAACGGTTGTCGATGCACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis