Browse Element(s) Details


Os.6368.1.S1_at

Description gb:AK066032.1
DB_XREF= gi:32976050
TID=Os.6368.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046D12, full insert sequence.
FL= gb:AK060850.1 gb:AK066032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0129011/11PCI domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01250Os.9707.1.S1_at10/114+178337..187650Amidase family protein, expressed
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01270NANA4+198241..199027hypothetical protein
LOC_Os04g01280Os.53113.1.A1_at11/114+206674..209979Glycosyltransferase family 43 protein, expressed
LOC_Os04g01290Os.6368.1.S1_at11/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01290Os.10209.2.S1_at1/114+210308..213358PCI domain containing protein, expressed
LOC_Os04g01300Os.9231.1.S1_at11/114+217398..220560rhomboid protein, putative, expressed
LOC_Os04g01310Os.53673.1.S1_at10/114+231089..233845D-mannose binding lectin family protein, expressed
LOC_Os04g01320Os.54385.1.S1_at10/114+237075..239769D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6368.1.S1_at--1058--6651Chr04:211145..211169 (25 bp)
GTTGACCAGCTTAACCAGGTTATCA
LOC_Os04g01290
Os.6368.1.S1_at--133--7891Chr04:210999..211152 (25 bp)
GGTTATCATTGTCAGTCGGCATACT
LOC_Os04g01290
Os.6368.1.S1_at--932--6351Chr04:210670..210694 (25 bp)
GATCCAAGGCTTGATGATCCGTTGA
LOC_Os04g01290
Os.6368.1.S1_at--609--5211Chr04:210563..210587 (25 bp)
GAATTACTTTGATCCCATGACCTTG
LOC_Os04g01290
Os.6368.1.S1_at--174--691Chr04:210547..210571 (25 bp)
ATGACCTTGTGGCTGGATCTGGATT
LOC_Os04g01290
Os.6368.1.S1_at--429--6411Chr04:210532..210556 (25 bp)
GATCTGGATTGCTATGGCATGCTAA
LOC_Os04g01290
Os.6368.1.S1_at--815--6811Chr04:210496..210520 (25 bp)
GTTTTTGTAGTCATAGCGGTGCTTA
LOC_Os04g01290
Os.6368.1.S1_at--28--6771Chr04:210461..210485 (25 bp)
GTTACACAAGTACCAATCAGTCGAT
LOC_Os04g01290
Os.6368.1.S1_at--10--5291Chr04:210418..210442 (25 bp)
GAATGGCAGATCTATTGTGGCAATT
LOC_Os04g01290
Os.6368.1.S1_at--204--7531Chr04:210402..210426 (25 bp)
GTGGCAATTTTCCTTCATAACGGAT
LOC_Os04g01290
Os.6368.1.S1_at--801--2091Chr04:210350..210374 (25 bp)
ACATCTGGTGCGATTTTTCATAACA
LOC_Os04g01290
Target Sequence 
GTTGACCAGCTTAACCAGGTTATCATTGTCAGTCGGCATACTGAGAGGATATTTGGGATGCCACAGTGGCAGAGTTTACG
TNCAAAGCTTGGAGTTTGGAGGGGAAACATTGCTAGTGCTATTAACACAATACAAGCAAACAAGGTGACTGATGATGGAT
CACAGGGGATCCAAGGCTTGATGATCCGTTGATGGAGAGGGGTTCCTGAATTGAAATTATAGTTTCAACTTTGAGTAGAT
GAGCAATCCTTTTGTATGAGATTACTTGTAATGTGAATTACTTTGATCCCATGACCTTGTGGCTGGATCTGGATTGCTAT
GGCATGCTAAGCAATCTCATTGTTTTTGTAGTCATAGCGGTGCTTAAAAGTCGGTTGTTACACAAGTACCAATCAGTCGA
TTACTAAAGAGNTTCCAACAGAATGGCAGATCTATTGTGGCAATTTTCCTTCATAACGGATTGATGAGTTAATGTATTAT
TGTTTAGAACATCTGGTGCGATTTTTCATAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis