Browse Element(s) Details


Os.6358.1.S1_at

Description gb:AK102466.1
DB_XREF= gi:32987675
TID=Os.6358.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094E18, full insert sequence.
FL= gb:AK099240.1 gb:AK102466.1 gb:AK059925.1 gb:AK099547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0162011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01580Os.5268.1.S1_at11/1112+349767..354072MATE efflux family protein, expressed
LOC_Os12g01590Os.27152.1.A1_at11/1112+354612..358271expressed protein
LOC_Os12g01600NANA12+363239..364726retrotransposon protein, putative, unclassified
LOC_Os12g01610NANA12+365357..365983retrotransposon protein, putative, unclassified
LOC_Os12g01620Os.6358.1.S1_at11/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_a_at9/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_x_at5/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.4.S1_x_at4/1112+373636..378324expressed protein
LOC_Os12g01620OsAffx.28618.1.S1_at1/1112+373636..378324expressed protein
LOC_Os12g01630OsAffx.7455.1.S1_at11/1112+379395..379742hypothetical protein
LOC_Os12g01640Os.47463.1.S1_x_at6/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01640Os.14491.2.S1_x_at4/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01650NANA12+389873..393204transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01660NANA12+399407..400441retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6358.1.S1_at--190--9331Chr12:374309..374333 (25 bp)
TCCCAATTCCTGTCGTTGAAGCATG
LOC_Os12g01620
Os.6358.1.S1_at--163--5371Chr12:374165..374189 (25 bp)
GAAGAGCCTCTTGGGCAGTACAGGA
LOC_Os12g01620
Os.6358.1.S1_at--964--2771Chr12:374141..374165 (25 bp)
AAGAGCTGCGCGTTTTGTCGTGGTC
LOC_Os12g01620
Os.6358.1.S1_at--859--5591Chr12:374069..374093 (25 bp)
GACAAGGACCGGTTTGAGCAACAAC
LOC_Os12g01620
Os.6358.1.S1_at--868--2531Chr12:374047..374071 (25 bp)
AACTCTTGCCGTGCGGGTCTATAGG
LOC_Os12g01620
Os.6358.1.S1_at--173--1091Chr12:374025..374049 (25 bp)
AGGGCTTGAGATGCCATTCACTTGC
LOC_Os12g01620
Os.6358.1.S1_at--648--5211Chr12:373946..373970 (25 bp)
GAATAATGAAGTGGCCCCTTGGACG
LOC_Os12g01620
Os.6358.1.S1_at--1008--9091Chr12:373915..373939 (25 bp)
TGCTCGCATCGTTTGTGCCAATCAA
LOC_Os12g01620
Os.6358.1.S1_at--1031--8991Chr12:373871..373895 (25 bp)
TGAATTGTCTTGTACTACCTTCGTC
LOC_Os12g01620
Os.6358.1.S1_at--331--7011Chr12:373860..373884 (25 bp)
GTACTACCTTCGTCCTCAAAATATA
LOC_Os12g01620
Os.6358.1.S1_at--233--2391Chr12:373734..373758 (25 bp)
AAACGTTAGCAGTCCTCTTATCTTG
LOC_Os12g01620
Target Sequence 
TCCCAATTCCTGTCGTTGAAGCATGCACCATCATTGAAGAGCCTCTTGGGCAGTACAGGAAGAGCTGCGCGTTTTGTCGT
GGTCACTTAGACATTTTACACCCCATGGGTCGTAAATTTGTTTGTGGAAACGACAAGGACCGGTTTGAGCAACAACTCTT
GCCGTGCGGGTCTATAGGGCTTGAGATGCCATTCACTTGCCGCCTGGGTCCGGCCTCTGTCAACAGTAGTCATGGGGAAA
AAGAAGACTAGGGGGAATAATGAAGTGGCCCCTTGGACGCCCTTTTGCTCGCATCGTTTGTGCCAATCAAGTCTGGTGAT
AACAGAAATTGAATTGTCTTGTACTACCTTCGTCCTCAAAATATAAGAAAAACTAAATGGGACATATCCTACTATTATGA
ACCTGGATAAAAATGATTCTACTCAGATTCAATAGTTTCTTATATTTTCAACGGAGGGAGGGAGTAAAACGTTAGCAGTC
CTCTTATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis