Browse Element(s) Details


Os.27152.1.A1_at

Description gb:AK106509.1
DB_XREF= gi:32991718
TID=Os.27152.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G12, full insert sequence.
FL= gb:AK106509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01550Os.56072.1.S1_at11/1112+330023..330715LOB domain protein 12, putative, expressed
LOC_Os12g01560Os.6019.1.S1_at11/1112+336846..340465expressed protein
LOC_Os12g01570Os.52259.1.S1_at3/1112+344084..348145Nodulin-like family protein, expressed
LOC_Os12g01580Os.5268.1.S1_at11/1112+349767..354072MATE efflux family protein, expressed
LOC_Os12g01590Os.27152.1.A1_at11/1112+354612..358271expressed protein
LOC_Os12g01600NANA12+363239..364726retrotransposon protein, putative, unclassified
LOC_Os12g01610NANA12+365357..365983retrotransposon protein, putative, unclassified
LOC_Os12g01620Os.6358.1.S1_at11/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_a_at9/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.1.S1_x_at5/1112+373636..378324expressed protein
LOC_Os12g01620Os.27569.4.S1_x_at4/1112+373636..378324expressed protein
LOC_Os12g01620OsAffx.28618.1.S1_at1/1112+373636..378324expressed protein
LOC_Os12g01630OsAffx.7455.1.S1_at11/1112+379395..379742hypothetical protein
LOC_Os12g01640Os.47463.1.S1_x_at6/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01640Os.14491.2.S1_x_at4/1112+381478..387555transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27152.1.A1_at--1052--1791Chr12:355152..355176 (25 bp)
ACGCGGGCCTTTCATTGGAACCATA
LOC_Os12g01590
Os.27152.1.A1_at--903--2111Chr12:355072..355096 (25 bp)
ACAGGTCAGGCTGTGCACGGAGCAA
LOC_Os12g01590
Os.27152.1.A1_at--128--471Chr12:355009..355033 (25 bp)
ATCTCGTCGGCCTTCATTCAGTGTT
LOC_Os12g01590
Os.27152.1.A1_at--1065--7311Chr12:354984..355008 (25 bp)
GTGCTTTGAATACCGCATCTGCGAC
LOC_Os12g01590
Os.27152.1.A1_at--273--8151Chr12:354959..354983 (25 bp)
GGACAACTCCACATACACATCTTGG
LOC_Os12g01590
Os.27152.1.A1_at--339--6251Chr12:354907..354931 (25 bp)
GATGGATTCATCACTCCGAGTTGGA
LOC_Os12g01590
Os.27152.1.A1_at--524--7331Chr12:354878..354902 (25 bp)
GTGCATACCATCACTGTGGAGCGGA
LOC_Os12g01590
Os.27152.1.A1_at--761--7951Chr12:354856..354880 (25 bp)
GGATCAATCATCTTGGTGACCGCCA
LOC_Os12g01590
Os.27152.1.A1_at--1118--1011Chr12:354827..354851 (25 bp)
AGGTATCCACACAGCGGAGTGTCTT
LOC_Os12g01590
Os.27152.1.A1_at--915--8671Chr12:354728..354752 (25 bp)
TGTGTTGCGCCTTGTATTTGTTACT
LOC_Os12g01590
Os.27152.1.A1_at--511--211Chr12:354713..354737 (25 bp)
ATTTGTTACTGATTCTTCCTTTTGT
LOC_Os12g01590
Target Sequence 
ACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTT
ACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCAT
TCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACC
GCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCC
ACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGA
AAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27152.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis