Browse Element(s) Details


Os.45887.1.S1_at

Description gb:AK120914.1
DB_XREF= gi:37990537
TID=Os.45887.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P-450LXXIA1 (cyp71A1) family (P0452F10.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034H03, full insert sequence.
FL= gb:AK120914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1275011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45887.1.S1_at--593--8071Chr01:7052980..7053004 (25 bp)
GGAGCATCTTAATTAATTTCTCTGT
LOC_Os01g12750
Os.45887.1.S1_at--47--3131Chr01:7052994..7053018 (25 bp)
AATTTCTCTGTATACTATATCTCAT
LOC_Os01g12750
Os.45887.1.S1_at--504--10591Chr01:7052997..7053021 (25 bp)
TTCTCTGTATACTATATCTCATTAT
LOC_Os01g12750
Os.45887.1.S1_at--42--191Chr01:7053024..7053048 (25 bp)
ATTTATTATGTTTTCTATGTGTTTC
LOC_Os01g12750
Os.45887.1.S1_at--181--6811Chr01:7053033..7053057 (25 bp)
GTTTTCTATGTGTTTCAAACTTTCA
LOC_Os01g12750
Os.45887.1.S1_at--135--3291Chr01:7053048..7053072 (25 bp)
CAAACTTTCATTTGTGTGACTGCGT
LOC_Os01g12750
Os.45887.1.S1_at--276--2051Chr01:7053051..7053075 (25 bp)
ACTTTCATTTGTGTGACTGCGTTGA
LOC_Os01g12750
Os.45887.1.S1_at--336--10551Chr01:7053054..7053078 (25 bp)
TTCATTTGTGTGACTGCGTTGATGC
LOC_Os01g12750
Os.45887.1.S1_at--991--211Chr01:7053057..7053081 (25 bp)
ATTTGTGTGACTGCGTTGATGCTGC
LOC_Os01g12750
Os.45887.1.S1_at--980--6871Chr01:7053106..7053130 (25 bp)
GTATATGAGTTTGCACAGTGAATGT
LOC_Os01g12750
Os.45887.1.S1_at--612--5231Chr01:7053150..7053174 (25 bp)
GAATAGATTTATTCCAATCTCTGCA
LOC_Os01g12750
Target Sequence 
GGAGCATCTTAATTAATTTCTCTGTATACTATATCTCATTATAAATTTATTATGTTTTCTATGTGTTTCAAACTTTCATT
TGTGTGACTGCGTTGATGCTGCTTATGTATGTATGTATGTATGTATGTATATGAGTTTGCACAGTGAATGTTTTTGTTTT
ATAAGTAAAGGAATAGATTTATTCCAATCTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis