Browse Element(s) Details


Os.30664.1.S1_at

Description gb:AK108512.1
DB_XREF= gi:32993721
TID=Os.30664.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P-450LXXIA1 (cyp71A1) family (P0452F10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A06, full insert sequence.
FL= gb:AK108512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1274011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30664.1.S1_at--508--10631Chr01:7047208..7047232 (25 bp)
TTCGACTGGGAGCTACCGCCACATG
LOC_Os01g12740
Os.30664.1.S1_at--1143--1571Chr01:7047278..7047302 (25 bp)
AGCTGTTTGGGCTGTCCATGCGAAT
LOC_Os01g12740
Os.30664.1.S1_at--417--2771Chr01:7047304..7047328 (25 bp)
AAGACGACGCTGAATCTAGTCGCAA
LOC_Os01g12740
Os.30664.1.S1_at--346--10071Chr01:7047320..7047344 (25 bp)
TAGTCGCAAAGCCATGGTCTTCCGA
LOC_Os01g12740
Os.30664.1.S1_at--1067--7811Chr01:7047335..7047359 (25 bp)
GGTCTTCCGATGTTTGATGTGTTCA
LOC_Os01g12740
Os.30664.1.S1_at--207--10011Chr01:7047382..7047406 (25 bp)
TAGCTACCATCTGTGCCTATTGCAA
LOC_Os01g12740
Os.30664.1.S1_at--1021--7431Chr01:7047417..7047441 (25 bp)
GTGTAGCGAGGGTCATCTATATTTA
LOC_Os01g12740
Os.30664.1.S1_at--1046--2852Chr01:7047448..7047472 (25 bp)
AAGTGCATGTGCACCTACACGTGCT
LOC_Os01g12740
Os.30664.1.S1_at--301--7331Chr01:7047468..7047492 (25 bp)
GTGCTTCACCGTTAGATTTGCTTTG
LOC_Os01g12740
Os.30664.1.S1_at--143--4951Chr01:7047577..7047601 (25 bp)
GCATTTAATGGCTTAGTACGTAGAT
LOC_Os01g12740
Os.30664.1.S1_at--357--8251Chr01:7047638..7047662 (25 bp)
GGCAGTCCCAACCTAGAAATTATCT
LOC_Os01g12740
Target Sequence 
TTCGACTGGGAGCTACCGCCACATGCCGACGGAGCGGCGGCGGCGACGGCGGCGAGGCTGGACATGGGTGAGCTGTTTGG
GCTGTCCATGCGAATGAAGACGACGCTGAATCTAGTCGCAAAGCCATGGTCTTCCGATGTTTGATGTGTTCAGTATGAAA
GCTGCTAGGCAGGCTAGCTACCATCTGTGCCTATTGCAACANATAATTTGTGTAGCGAGGGTCATCTATATTTAAGGGGT
AAGTGCATGTGCACCTACACGTGCTTCACCGTTAGATTTGCTTTGACATTAGTGTATACTTTTTATATTTTAGTTAAGCA
CAATATATATTATGTTCTCGGTATAACATGAATTCATAATATCAGTAAAGCATTTAATGGCTTAGTACGTAGATAGAGTG
CACATGAACTTAGAGCAATGATAATAGTGGGGCAGTCCCAACCTAGAAATTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis