Browse Element(s) Details


Os.45887.2.S1_x_at

Description gb:NM_188578.1
DB_XREF= gi:34904239
GEN=P0452F10.8
TID=Os.45887.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45887 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P-450LXXIA1 (cyp71A1) family (P0452F10.8), mRNA.
PROD=putative cytochrome P-450LXXIA1 (cyp71A1)family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1275011/11Cytochrome P450 family protein, expressed
LOC_Os01g127401/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45887.2.S1_x_at--946--1251Chr01:7052399..7052423 (25 bp)
AGATTCGCGCGGTCGTGGGCACATC
LOC_Os01g12750
Os.45887.2.S1_x_at--671--7191Chr01:7052410..7052434 (25 bp)
GTCGTGGGCACATCGAGTGCATCCG
LOC_Os01g12750
Os.45887.2.S1_x_at--838--7391Chr01:7052660..7052684 (25 bp)
GTGATTCCGCGGAGGAGTTCGTGCC
LOC_Os01g12750
Os.45887.2.S1_x_at--89--5291Chr01:7052742..7052766 (25 bp)
GAAGGACTCCAGGTTTGTGCCGTTC
LOC_Os01g12750
Os.45887.2.S1_x_at--495--2632Chr01:7052833..7052857 (25 bp)
AACCTGCTGTACCACTTCGACTGGG
LOC_Os01g12750
Os.45887.2.S1_x_at--240--10631Chr01:7052848..7052872 (25 bp)
TTCGACTGGGAGTTGCCACCGCCGG
LOC_Os01g12750
Os.45887.2.S1_x_at--449--411Chr01:7052884..7052908 (25 bp)
ATCATGGCGACGACGAGATTGGACA
LOC_Os01g12750
Os.45887.2.S1_x_at--654--4091Chr01:7052894..7052918 (25 bp)
CGACGAGATTGGACATGGACGAGCT
LOC_Os01g12750
Os.45887.2.S1_x_at--943--8531Chr01:7052909..7052933 (25 bp)
TGGACGAGCTGTTCGGATTGTCCGT
LOC_Os01g12750
Os.45887.2.S1_x_at--7--10611Chr01:7052920..7052944 (25 bp)
TTCGGATTGTCCGTGCGTCTCAAGG
LOC_Os01g12750
Os.45887.2.S1_x_at--551--8711Chr01:7052927..7052951 (25 bp)
TGTCCGTGCGTCTCAAGGCGGATCT
LOC_Os01g12750
Target Sequence 
AGATTCGCGCGGTCGTGGGCACATCGAGTGCATCCGCCGCCGCCGCCGCCNCCGNCNNCGGNCAANNGTNCACCNGAGGA
CCACCTCGGCGAGCTGNCCTTCCTCAGGGCCGTGATCAAGGAGATGCTCCGGCTGCACGCGCCGGGGCCGNTTCTNCTCC
CCCGCGAGACGGTGGAGGACACGGAGNCTGCTGGGCTACCGCATCCCGGNGCGCACGNGGGTGANCANCAACGTGTGNGC
CATCGGCCGCGACGCGGCGGCGTGGGGTGATTCCGCGGAGGAGTTCGTGCCGGAGCGGTGGCTCGATGGCGGCGGCGGTG
GCGGCGTGGAGTACGCGCAGCAGCTGGGGAAGGACTCCAGGTTTGTGCCGTTCGGCGCCGGGAGGAGAGGCTGCCCCGGC
GCCGGGTTCGCCGCGCTGAGCGTCGAGCTGGCGCTCGCCAACCTGCTGTACCACTTCGACTGGGAGTTGCCACCGCCGGC
GGCCAGCGGGATCATGGCGACGACGAGATTGGACATGGACGAGCTGTTCGGATTGTCCGTGCGTCTCAAGGCGGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45887.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis