Browse Element(s) Details


Os.11710.1.S1_at

Description gb:AK070320.1
DB_XREF= gi:32980344
TID=Os.11710.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RAS-related GTP-binding protein Rab7 family (P0452F10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052D24, full insert sequence.
FL= gb:AK059958.1 gb:AK070320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1273011/11Ras-related protein Rab7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11710.1.S1_at--222--6511Chr01:7043918..7043942 (25 bp)
GATATCGCCAGTTGATTCTACCGGA
LOC_Os01g12730
Os.11710.1.S1_at--660--7971Chr01:7043940..7043964 (25 bp)
GGATCGGTGTAGATCATCATCCTCA
LOC_Os01g12730
Os.11710.1.S1_at--978--3631Chr01:7043968..7043992 (25 bp)
CTTCCACTGTGTGATATCTTTAGTT
LOC_Os01g12730
Os.11710.1.S1_at--405--8971Chr01:7043993..7044017 (25 bp)
TGAAAGCCTCTATCTATGTCCAATG
LOC_Os01g12730
Os.11710.1.S1_at--979--10311Chr01:7044130..7044154 (25 bp)
TTTCTACCCTTCTGTTTGATTGCTG
LOC_Os01g12730
Os.11710.1.S1_at--259--4771Chr01:7044151..7044175 (25 bp)
GCTGCAGTGCACATATCTTTTCTGT
LOC_Os01g12730
Os.11710.1.S1_at--537--6591Chr01:7044178..7044202 (25 bp)
GATTGCTTCAGTGCATATCTGGAGA
LOC_Os01g12730
Os.11710.1.S1_at--332--1751Chr01:7044245..7044269 (25 bp)
ACCTATCAATCTGGTTCTGTTCTCT
LOC_Os01g12730
Os.11710.1.S1_at--750--8791Chr01:7044262..7044286 (25 bp)
TGTTCTCTGCCCATTTTGATGGTAG
LOC_Os01g12730
Os.11710.1.S1_at--518--5891Chr01:7044286..7044310 (25 bp)
GAGCGTGCCAGATCTGTATCTATAT
LOC_Os01g12730
Os.11710.1.S1_at--917--271Chr01:7044307..7044331 (25 bp)
ATATGGCTTGCTACTTGCTAATACA
LOC_Os01g12730
Target Sequence 
GATATCGCCAGTTGATTCTACCGGATCGGTGTAGATCATCATCCTCACCTCTTCCACTGTGTGATATCTTTAGTTTGAAA
GCCTCTATCTATGTCCAATGCTACATATTGTTTTTTTAGTGCTCCAACATAATTGGAGAAGATTCATTTGTAACTGTTTT
TACTCCTACCTTTGTATCTGCTAGATGCTAGAGTTGGGATACCTTTTTAGTCTTTCTACCCTTCTGTTTGATTGCTGCAG
TGCACATATCTTTTCTGTTTGATTGCTTCAGTGCATATCTGGAGAGACCAAAACATGTTCTGTGAAAGCTTGTAAATTGA
CAGAACAACCTATCAATCTGGTTCTGTTCTCTGCCCATTTTGATGGTAGAGCGTGCCAGATCTGTATCTATATGGCTTGC
TACTTGCTAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis