Browse Element(s) Details


OsAffx.4678.1.S1_at

Description tigr:9633.m04771
TID=OsAffx.4678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5067011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640Os.54158.1.S1_at11/115+28945595..28949500hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4678.1.S1_at--1016--731Chr05:28963732..28963756 (25 bp)
ATGTACCTGGGCGAGAGGCAACAAT
LOC_Os05g50670
OsAffx.4678.1.S1_at--911--931Chr05:28963717..28963741 (25 bp)
AGGCAACAATATGCTTCGGCTGGTT
LOC_Os05g50670
OsAffx.4678.1.S1_at--1053--2431Chr05:28963713..28963737 (25 bp)
AACAATATGCTTCGGCTGGTTCAGA
LOC_Os05g50670
OsAffx.4678.1.S1_at--75--271Chr05:28963709..28963733 (25 bp)
ATATGCTTCGGCTGGTTCAGACAGG
LOC_Os05g50670
OsAffx.4678.1.S1_at--497--9071Chr05:28963706..28963730 (25 bp)
TGCTTCGGCTGGTTCAGACAGGCAG
LOC_Os05g50670
OsAffx.4678.1.S1_at--58--5011Chr05:28963685..28963709 (25 bp)
GCAGGGTGTCCGTGATGTCATCAGC
LOC_Os05g50670
OsAffx.4678.1.S1_at--858--7711Chr05:28963682..28963706 (25 bp)
GGGTGTCCGTGATGTCATCAGCTTT
LOC_Os05g50670
OsAffx.4678.1.S1_at--321--4391Chr05:28963648..28963672 (25 bp)
GCCAAAGCGTCCTCTCCAAACAGGG
LOC_Os05g50670
OsAffx.4678.1.S1_at--657--991Chr05:28963622..28963646 (25 bp)
AGGTTCAGAGAACAATCCCGGTGAT
LOC_Os05g50670
OsAffx.4678.1.S1_at--83--1411Chr05:28963614..28963638 (25 bp)
AGAACAATCCCGGTGATCGTCCTGG
LOC_Os05g50670
OsAffx.4678.1.S1_at--1111--6391Chr05:28963600..28963624 (25 bp)
GATCGTCCTGGCGTTTAGCCATGAA
LOC_Os05g50670
Target Sequence 
ATGTACCTGGGCGAGAGGCAACAATATGCTTCGGCTGGTTCAGACAGGCAGGGTGTCCGTGATGTCATCAGCTTTGCAAG
CACAGCCAAAGCGTCCTCTCCAAACAGGGGAGGTTCAGAGAACAATCCCGGTGATCGTCCTGGCGTTTAGCCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis