Browse Element(s) Details


Os.45882.1.A1_at

Description gb:NM_187985.1
DB_XREF= gi:34903053
TID=Os.45882.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g158909/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45882.1.A1_at--502--10791NONE
TTGTGCCGAGCATGCCAGTTCCATG
NONE
Os.45882.1.A1_at--304--3931Chr01:8941206..8941230 (25 bp)
CGGCCCAGGCTTTGCAGACAATACT
LOC_Os01g15890
Os.45882.1.A1_at--816--1411Chr01:8941191..8941215 (25 bp)
AGACAATACTGCTCTCCTGGCCGTT
LOC_Os01g15890
Os.45882.1.A1_at--765--7671Chr01:8941117..8941141 (25 bp)
GGGTACGAGTACATCTACGTCGCCA
LOC_Os01g15890
Os.45882.1.A1_at--136--6211Chr01:8941069..8941093 (25 bp)
GAGGCTTACCCTGTCGTGAAAATCG
LOC_Os01g15890
Os.45882.1.A1_at--578--2991Chr01:8941049..8941073 (25 bp)
AATCGATAAGCACTCGGCCCTTAAG
LOC_Os01g15890
Os.45882.1.A1_at--547--10071Chr01:8940953..8940977 (25 bp)
TAGTGAGCTCTTTGGCAACAACTGT
LOC_Os01g15890
Os.45882.1.A1_at--182--4551Chr01:8940892..8940916 (25 bp)
GCCCACTCCAAAAGCAACGGTCAAG
LOC_Os01g15890
Os.45882.1.A1_at--1161--6391Chr01:8940848..8940872 (25 bp)
GATCTTCAAGGGACTCGAAACCAAG
LOC_Os01g15890
Os.45882.1.A1_at--1066--6591Chr01:8940793..8940812 (20 bp)
GATTGAGGAGCTACCAGCGGCTGTC
LOC_Os01g15890
Os.45882.1.A1_at--220--4411Chr01:8940656..8940680 (25 bp)
GCCACGATGTATGCCGAGGCCGATC
NONE
Target Sequence 
TTGTGCCGAGCATGCCAGTTCCATGCCAAGCATGCTCATCAGCCGGCCCAGGCTTTGCAGACAATACTGCTCTCCTGGCC
GTTCGCAGTCTGGGGGCTGGACATCCTAGGCCCCTTCAAGAAGGCCCGCCGAGGGTACGAGTACATCTACGTCGCCATCG
ACAAGTTCACCAAGTGGCCCGAGGCTTACCCTGTCGTGAAAATCGATAAGCACTCGGCCCTTAAGTTCATCGGGGGCATC
ACTGCCCGCTTCGGGGTGCCTAACCGCATCGTCACAAACAACGGCACCCAGTTCACTAGTGAGCTCTTTGGCAACAACTG
TGACGACATGGGCATCAAGCTCTGCTTCACCTCACCTGCCCACTCCAAAAGCAACGGTCAAGTGGAGCGCGCAAACGCGG
AGATCTTCAAGGGACTCGAAACCAAGACGTACAATGTCCTCAAGAAGCACGGGGACTCATGGATTGAGGAGCTACCAGCG
GCTGTCCTGCCATTTGAGCTGACCCTGGGCTCCCCCCGGGCCACGATGTATGCCGAGGCCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45882.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis