Browse Element(s) Details


Os.6811.1.S1_s_at

Description gb:AK106529.1
DB_XREF= gi:32991738
TID=Os.6811.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H01, full insert sequence.
FL= gb:AK106529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4906011/11Protein prenyltransferase alpha subunit repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49070NANA1+28524828..28525142hypothetical protein
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6811.1.S1_s_at--460--5471Chr01:28519480..28519504 (25 bp)
GAACTGACGTGGAATGAGAAACTTA
LOC_Os01g49060
Os.6811.1.S1_s_at--546--691Chr01:28519493..28519517 (25 bp)
ATGAGAAACTTATCAGGCGCTACCA
LOC_Os01g49060
Os.6811.1.S1_s_at--1155--1411Chr01:28519496..28519520 (25 bp)
AGAAACTTATCAGGCGCTACCAAGG
LOC_Os01g49060
Os.6811.1.S1_s_at--406--6371Chr01:28519638..28519662 (25 bp)
GATCCATCGTAGGTTCCTCTCACAA
LOC_Os01g49060
Os.6811.1.S1_s_at--173--511Chr01:28519643..28519667 (25 bp)
ATCGTAGGTTCCTCTCACAATGGTG
LOC_Os01g49060
Os.6811.1.S1_s_at--329--4031Chr01:28519645..28519669 (25 bp)
CGTAGGTTCCTCTCACAATGGTGGA
LOC_Os01g49060
Os.6811.1.S1_s_at--880--10072Chr02:27247320..27247736 (25 bp)
TAGGTTCCTCTCACAATGGTGGATG
NONE
Os.6811.1.S1_s_at--154--7771Chr01:28519792..28519816 (25 bp)
GGTGAGGCATGTGTCCAATCTGAAC
LOC_Os01g49060
Os.6811.1.S1_s_at--833--6191Chr01:28519795..28519819 (25 bp)
GAGGCATGTGTCCAATCTGAACTTG
LOC_Os01g49060
Os.6811.1.S1_s_at--295--8591Chr01:28519801..28519825 (25 bp)
TGTGTCCAATCTGAACTTGCAGCCC
LOC_Os01g49060
Os.6811.1.S1_s_at--167--9211Chr01:28519805..28519829 (25 bp)
TCCAATCTGAACTTGCAGCCCTCTA
LOC_Os01g49060
Target Sequence 
GAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTAGGTTCCTCTCACA
ATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCC
AGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTGCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCA
GCCCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6811.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis