Browse Element(s) Details


Os.11143.1.S1_at

Description gb:AK063169.1
DB_XREF= gi:32973187
TID=Os.11143.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B11, full insert sequence.
FL= gb:AK063169.1 gb:AK062697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5198011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51970Os.49751.1.S1_at10/113+29774009..29776376expressed protein
LOC_Os03g51980Os.11143.1.S1_at11/113+29778056..29779054expressed protein
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11143.1.S1_at--54--8471Chr03:29778525..29778549 (25 bp)
TGGCCGCCTACGTGGCGTGCACCAA
LOC_Os03g51980
Os.11143.1.S1_at--1076--1931Chr03:29778675..29778699 (25 bp)
ACGGCGGTGCCGTAACCGTGCTGCA
LOC_Os03g51980
Os.11143.1.S1_at--313--7711Chr03:29778801..29778825 (25 bp)
GGGTGCACAACTGAGGACAGATCGT
LOC_Os03g51980
Os.11143.1.S1_at--253--2131Chr03:29778817..29778841 (25 bp)
ACAGATCGTGTACTCGTACGTGGCC
LOC_Os03g51980
Os.11143.1.S1_at--971--9931Chr03:29778833..29778857 (25 bp)
TACGTGGCCGGTGCATGTGTACATT
LOC_Os03g51980
Os.11143.1.S1_at--904--9191Chr03:29778866..29778890 (25 bp)
TGCCATGACGTCGTGTGCAAAGAAT
LOC_Os03g51980
Os.11143.1.S1_at--916--2831Chr03:29778896..29778920 (25 bp)
AAGTAGTAGTCCATATTTGCCCAAA
LOC_Os03g51980
Os.11143.1.S1_at--339--211Chr03:29778910..29778934 (25 bp)
ATTTGCCCAAATATTGTCAGTCCAA
LOC_Os03g51980
Os.11143.1.S1_at--606--10171Chr03:29778938..29778962 (25 bp)
TATAATGGGCCGTATCAGCCCTAAA
LOC_Os03g51980
Os.11143.1.S1_at--814--2391Chr03:29778979..29779003 (25 bp)
AAACAGTAGTATGGGCCGGGTCACA
LOC_Os03g51980
Os.11143.1.S1_at--612--8391Chr03:29778992..29779016 (25 bp)
GGCCGGGTCACAATTGTCAAAGCTT
LOC_Os03g51980
Target Sequence 
TGGCCGCCTACGTGGCGTGCACCAAGGGCCGCGCCGGCGCCGGCNACAAGAAGAAGAAGAAGANAGCCAAGGCGGCCGCG
CGCGGCGGGTGCGGCATGTGGAACGGGTGGGCGTCGGGCGCGAGGTACGCACGGGTGATGTCGTGCAGGCACGGCGGTGC
CGTAACCGTGCTGCAGGGCGCCACTCCTCTTCCCGCCGTCGCCGGCTATGCCGAGTCGCCGGCGCACCCCACGCTGGACC
TGTCCCGCCTGCCGGCGGTGCTNCCGGGGAGGAGACNGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGCCGG
TGCATGTGTACATTGATACTANTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTAGTAGTCCATATTTGCCCAAATAT
TGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTAAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCACA
ATTGTCAAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis