Browse Element(s) Details


OsAffx.13462.1.S1_at

Description tigr:9631.m05083
TID=OsAffx.13462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ACT domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5199011/11ACT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51970Os.49751.1.S1_at10/113+29774009..29776376expressed protein
LOC_Os03g51980Os.11143.1.S1_at11/113+29778056..29779054expressed protein
LOC_Os03g51990OsAffx.13462.1.S1_at11/113+29786820..29788818ACT domain containing protein, expressed
LOC_Os03g52000Os.9232.1.S1_x_at11/113+29789048..29793799BSD domain containing protein, expressed
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13462.1.S1_at--215--4171Chr03:29788088..29788208 (25 bp)
CCCTTGCCATCCAGGAGTACTACAT
LOC_Os03g51990
OsAffx.13462.1.S1_at--1137--791Chr03:29788220..29788244 (25 bp)
ATGGGCGCACGGTCGACAGCAACGC
LOC_Os03g51990
OsAffx.13462.1.S1_at--262--2151Chr03:29788235..29788259 (25 bp)
ACAGCAACGCCGAGCGGCAGAAGGT
LOC_Os03g51990
OsAffx.13462.1.S1_at--300--7911Chr03:29788430..29788454 (25 bp)
GGTTGCTGTCGGACTTCACGAGGAT
LOC_Os03g51990
OsAffx.13462.1.S1_at--1089--2031Chr03:29788442..29788466 (25 bp)
ACTTCACGAGGATGCTGCGGGAGCA
LOC_Os03g51990
OsAffx.13462.1.S1_at--832--2891Chr03:29788504..29788528 (25 bp)
AAGGACGAGGCCATCGGGACATTCT
LOC_Os03g51990
OsAffx.13462.1.S1_at--255--7631Chr03:29788519..29788543 (25 bp)
GGGACATTCTACCTCGTCACCGACG
LOC_Os03g51990
OsAffx.13462.1.S1_at--901--6391Chr03:29788605..29788629 (25 bp)
GATCTCGTTCGAAGTGGCCAAGGAC
LOC_Os03g51990
OsAffx.13462.1.S1_at--817--10631Chr03:29788612..29788636 (25 bp)
TTCGAAGTGGCCAAGGACGCGCCTG
LOC_Os03g51990
OsAffx.13462.1.S1_at--149--3371Chr03:29788643..29788667 (25 bp)
CACCGGTGAGGAAGACCAGCGTGCC
LOC_Os03g51990
OsAffx.13462.1.S1_at--379--9251Chr03:29788763..29788787 (25 bp)
TCCTCTGGTCACACCTTGGGAAGCT
LOC_Os03g51990
Target Sequence 
CCCTTGCCATCCAGGAGTACTACATCCGGCACAAGGATGGGCGCACGGTCGACAGCAACGCCGAGCGGCAGAAGGTCTCC
CGGTGCCTCGTCGCCGCCGTGGAGCGGAGGGCCTCCCATGGCGCGAAGGTGGAGGTGCGCGCCGCCGACCGGTCGGGGTT
GCTGTCGGACTTCACGAGGATGCTGCGGGAGCACGGGCTGTCGCTGCTGAGGGTGGAGCTGAAGCGGCGGAAGGACGAGG
CCATCGGGACATTCTACCTCGTCACCGACGCCGGCGGCGAGGTGCGCGCCGAGGCGCTGCACGCGGTGCGGGCAAGGGTC
GGCAAGGTGGGGATCTCGTTCGAAGTGGCCAAGGACGCGCCTGGCTGGCCACCGGTGAGGAAGACCAGCGTGCCGGCACC
GCCCGCCGAAGCGGCTCCGGCGGTGGCAACGCCGGCGGCACCGCCGGCGGCGGAGGGCCAGGAGAGGCCGAGGTCCTCCC
TCGGGAGCCTCCTCTGGTCACACCTTGGGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis