Browse Element(s) Details


Os.15597.1.S1_a_at

Description gb:AK066477.1
DB_XREF= gi:32976495
TID=Os.15597.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070H07, full insert sequence.
FL= gb:AK066477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5207011/11Serine carboxypeptidase family protein, expressed
LOC_Os06g327801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52010Os.53266.1.S1_at11/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.3.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52010Os.3927.1.S1_x_at1/113+29795460..29797587Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g52020OsAffx.25685.1.S1_at11/113+29803099..29803622expressed protein
LOC_Os03g52030OsAffx.13463.1.S1_at11/113+29805395..29805838hypothetical protein
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52080OsAffx.3580.1.S1_at10/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_at2/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.20341.1.S1_s_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_x_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52090Os.33998.1.S1_at11/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52090Os.52198.3.S1_at1/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15597.1.S1_a_at--748--1032Chr06:19064739..19064760 (22 bp)
AGGTGCCATTTTTGAGCACTCAGGC
LOC_Os06g32780
Os.15597.1.S1_a_at--147--2691Chr03:29825585..29825718 (25 bp)
AAGCTGCTGGATTCACAATTACGTA
LOC_Os03g52070
Os.15597.1.S1_a_at--630--7511Chr03:29825892..29825916 (25 bp)
GTGGTTCCCATGTCGCTACAGTAAA
LOC_Os03g52070
Os.15597.1.S1_a_at--6--3091Chr03:29825960..29825984 (25 bp)
AATAAGCCTCTATGATGTTGCCAGC
LOC_Os03g52070
Os.15597.1.S1_a_at--473--6691Chr03:29825976..29826000 (25 bp)
GTTGCCAGCTCCTATTTGTCAGAAA
LOC_Os03g52070
Os.15597.1.S1_a_at--216--10491Chr03:29826014..29826038 (25 bp)
TTAACTCAACCATGTGTCTGCTGTC
LOC_Os03g52070
Os.15597.1.S1_a_at--16--8711Chr03:29826035..29826059 (25 bp)
TGTCCAAGTGCCATGGTTCTCGAAA
LOC_Os03g52070
Os.15597.1.S1_a_at--30--9851Chr03:29826086..29826110 (25 bp)
TAAATAGTGTTCTCTTCTGCCGAAA
LOC_Os03g52070
Os.15597.1.S1_a_at--20--3831Chr03:29826102..29826126 (25 bp)
CTGCCGAAAGGCAGGTTTCACTTAA
LOC_Os03g52070
Os.15597.1.S1_a_at--545--3311Chr03:29826189..29826213 (25 bp)
CACATCCATTGGGTTCTATTTATAG
LOC_Os03g52070
Os.15597.1.S1_a_at--638--2251Chr03:29826087..29826111 (25 bp)
AAATAGTGTTCTCTTCTGCCGAAAG
LOC_Os03g52070
Target Sequence 
AGGTGCCATTTTTGAGCACTCAGGCATGGATAAGATCCTTTAACTTCTTCATAGTTGATGACTGGAGAGCATGGCATGTG
GATGGCCAAGCTGCTGGATTCACAATTACGTATGCCAACAACTTGACCTTTGCCACAGTAAAGGGTGGTTCCCATGTCGC
TACAGTAAACANGCCTAAANAATCTTTCGCCATGGGGAAACGGTGGCTAGCCAATAAGCCTCTATGATGTTGCCAGCTCC
TATTTGTCAGAAATGTTTGCAGGGTTTTAACTCAACCATGTGTCTGCTGTCCAAGTGCCATGGTTCTCGAAAAAATACTA
TTTGTAATGGAGCCCATNTAAATAGTGTTCTCTTCTGCCGAAAGGCAGGTTTCACTTAAAGTGAAATGGAAAACACAATA
GTTATATATTAATTTCTCTCGAAAAAANTTNNNNCCNNNTACACATCCATTGGGTTCTATTTATAGGTTTACAAAAATAG
TGTTCTCTTCTGCCGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15597.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis