Browse Element(s) Details


OsAffx.3580.1.S1_at

Description tigr:9631.m05092
TID=OsAffx.3580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5208010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52040Os.20341.1.S1_s_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.20341.2.S1_at11/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.25253.1.S1_at9/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52040Os.10728.1.S1_at1/113+29809467..29815150Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52080OsAffx.3580.1.S1_at10/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_at2/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.20341.1.S1_s_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_x_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52090Os.33998.1.S1_at11/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52090Os.52198.3.S1_at1/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3580.1.S1_at--969--2951Chr03:29836681..29836705 (25 bp)
AATGGTGTTTCAAGTAGGGCTCTAC
LOC_Os03g52080
OsAffx.3580.1.S1_at--351--10371Chr03:29836890..29836911 (22 bp)
TTTTCATACCGGTTCTACCTATTGA
LOC_Os03g52080
OsAffx.3580.1.S1_at--385--5611Chr03:29836926..29836950 (25 bp)
GACAAGGCAACCAGAGATGCTCTTA
LOC_Os03g52080
OsAffx.3580.1.S1_at--1034--3071Chr03:29837088..29837112 (25 bp)
AATACCGAAGTATTCCCCTATGCTA
LOC_Os03g52080
OsAffx.3580.1.S1_at--621--10051Chr03:29837111..29837135 (25 bp)
TAGGGACGTTCCAAGCACCATACAG
LOC_Os03g52080
OsAffx.3580.1.S1_at--43--1711Chr03:29837127..29837151 (25 bp)
ACCATACAGTACCATCTTAACCTCA
LOC_Os03g52080
OsAffx.3580.1.S1_at--496--3291Chr03:29837153..29837177 (25 bp)
CACAAGAGGTTACCGGGCGCTTGTA
LOC_Os03g52080
OsAffx.3580.1.S1_at--45--8391Chr03:29837168..29837280 (25 bp)
GGCGCTTGTATTCTGCGGTGACCAT
LOC_Os03g52080
OsAffx.3580.1.S1_at--187--4431NONE
GCCAGGCTGCGGGATTTACAGTTAT
NONE
OsAffx.3580.1.S1_at--1126--1051Chr03:29837714..29837738 (25 bp)
AGGGTAGTGGTCATGCTCCTATATC
LOC_Os03g52080
OsAffx.3580.1.S1_at--1051--8471Chr03:29837776..29837971 (25 bp)
TGGCTGGACCATTATATTACACGAT
LOC_Os03g52080
Target Sequence 
AATGGTGTTTCAAGTAGGGCTCTACTAGAAGAATACAGTCGGCTAAGTGAGCCAACTGCTCGACCTACTATCAATTGTTT
TTCATACCGGTTCTACCTATTGAACATATGGATGAATGACAAGGCAACCAGAGATGCTCTTAAAATCAAGAAGGGAACGG
TCGGTGTGTGGACAAGATGCAATACCGAAGTATTCCCCTATGCTAGGGACGTTCCAAGCACCATACAGTACCATCTTAAC
CTCACCACAAGAGGTTACCGGGCGCTTGTATTCTGCGGTGACCATGATCTCATGGTGCCATTTCTGGGCACTCAGGCATG
GATAAGATCCTTAAACTTCACCATTATTGATGACTGGAGAGCATGGCATCTTGATGGCCAGGCTGCGGGATTTACAGTTA
TGTATGACAACAACTTGACTTTTGCCACATTAAAGGGTAGTGGTCATGCTCCTATATCATACAAGCCTAAACAAGGTTTT
GCCATGGGTCAACGATGGCTGGACCATTATATTACACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis