Browse Element(s) Details


Os.52198.3.S1_at

Description gb:AK065570.1
DB_XREF= gi:32975588
TID=Os.52198.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027N16, full insert sequence.
FL= gb:AK065570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g520901/11Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52070Os.15597.1.S1_a_at11/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52070Os.20341.1.S1_s_at1/113+29821645..29826326Serine carboxypeptidase family protein, expressed
LOC_Os03g52080OsAffx.3580.1.S1_at10/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_at2/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.20341.1.S1_s_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52080Os.52150.1.S1_x_at1/113+29831505..29838042Serine carboxypeptidase family protein, expressed
LOC_Os03g52090Os.33998.1.S1_at11/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52090Os.52198.3.S1_at1/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52100NANA3+29864798..29867877expressed protein
LOC_Os03g52110OsAffx.31867.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.22699.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.16451.1.A1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006816biological_processcalcium ion transport
GO:0010042biological_processresponse to manganese ion
GO:0030026biological_processmanganese ion homeostasis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52198.3.S1_at--413--7171Chr04:6229751..6229775 (25 bp)
GTCTCCCAAGACTCATTTTCGTTTT
NONE
Os.52198.3.S1_at--255--7691Chr04:6229726..6229750 (25 bp)
GGGTTTCTTGTAGTTGCTTGCTGCA
NONE
Os.52198.3.S1_at--212--5151Chr04:6229676..6229700 (25 bp)
GCAAAATGGTCTCTTGTTCTTGTTT
NONE
Os.52198.3.S1_at--612--6831Chr04:6229648..6229672 (25 bp)
GTTTCATGTAATCCTGTCGTTTTCC
NONE
Os.52198.3.S1_at--1057--951Chr04:6229623..6229647 (25 bp)
AGGACCTTTGTTGCTCTGCGTAGTT
NONE
Os.52198.3.S1_at--265--10051Chr04:6229603..6229627 (25 bp)
TAGTTTTGCCGCTTAAATCCCAGGT
NONE
Os.52198.3.S1_at--447--6891Chr04:6229580..6229604 (25 bp)
GTATAGCAGCCCATGATTTCAGCCT
NONE
Os.52198.3.S1_at--399--3371Chr04:6229561..6229585 (25 bp)
CAGCCTGTCCTTTTAGAACTCGGTA
NONE
Os.52198.3.S1_at--480--7072Chr04:6229455..6229479 (25 bp)
GTAATATCCCATCTTTGTGTCTCAC
NONE
Os.52198.3.S1_at--853--8671Chr04:6229440..6229464 (25 bp)
TGTGTCTCACTTCTTGGATTGTCAG
NONE
Os.52198.3.S1_at--1081--11Chr04:6229423..6229447 (25 bp)
ATTGTCAGTAGACTCTCCTTAAGGC
NONE
Target Sequence 
GTCTCCCAAGACTCATTTTCGTTTTGGGTTTCTTGTAGTTGCTTGCTGCATAGTATATTCACAACAAGAGTAGAAGCAAA
ATGGTCTCTTGTTCTTGTTTATTGTTTCATGTAATCCTGTCGTTTTCCAGGACCTTTGTTGCTCTGCGTAGTTTTGCCGC
TTAAATCCCAGGTATAGCAGCCCATGATTTCAGCCTGTCCTTTTAGAACTCGGTAACCATATAACTCCAGAACATCCTCA
GCCTGATAAGTATAAGTAGCATCTGTTATTTCCAATGTTTGTTTCCTTATTAGCTTGTAATATCCCATCTTTGTGTCTCA
CTTCTTGGATTGTCAGTAGACTCTCCTTAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52198.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis