Browse Element(s) Details


OsAffx.25687.1.S1_at

Description tigr:9631.m05099
TID=OsAffx.25687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5214011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52090Os.33998.1.S1_at11/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52090Os.52198.3.S1_at1/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52100NANA3+29864798..29867877expressed protein
LOC_Os03g52110OsAffx.31867.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.22699.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.16451.1.A1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25687.1.S1_at--787--10751Chr03:29883989..29884013 (25 bp)
TTGACATATCCGCATCAGAACTTGG
LOC_Os03g52140
OsAffx.25687.1.S1_at--453--3031Chr03:29883951..29883975 (25 bp)
AATCCGAATCCAACATTTACCACAA
LOC_Os03g52140
OsAffx.25687.1.S1_at--85--3351Chr03:29883902..29883926 (25 bp)
CACGGAACTGTTGGGAGCTGGCATT
LOC_Os03g52140
OsAffx.25687.1.S1_at--103--4951Chr03:29883882..29883906 (25 bp)
GCATTCCCACATCTGGTCGTCGAAT
LOC_Os03g52140
OsAffx.25687.1.S1_at--69--5231Chr03:29883861..29883885 (25 bp)
GAATCCCGTGGGAGGCTCTATCTAG
LOC_Os03g52140
OsAffx.25687.1.S1_at--779--4811Chr03:29883847..29883871 (25 bp)
GCTCTATCTAGTTGTTTATGACCGA
LOC_Os03g52140
OsAffx.25687.1.S1_at--320--10411Chr03:29883832..29883856 (25 bp)
TTATGACCGACATTGTATACGCGAT
LOC_Os03g52140
OsAffx.25687.1.S1_at--891--10171Chr03:29883817..29883841 (25 bp)
TATACGCGATATGTGCCTCTTCAAG
LOC_Os03g52140
OsAffx.25687.1.S1_at--949--7831Chr03:29883729..29883753 (25 bp)
GGTAAACTGCATTTCACGGCATCAT
LOC_Os03g52140
OsAffx.25687.1.S1_at--1098--1931Chr03:29883714..29883738 (25 bp)
ACGGCATCATATTGTGCTCGGCAGC
LOC_Os03g52140
OsAffx.25687.1.S1_at--860--31Chr03:29883704..29883728 (25 bp)
ATTGTGCTCGGCAGCTTGGATTGAA
LOC_Os03g52140
Target Sequence 
TTGACATATCCGCATCAGAACTTGGAGTTATCAAGTTAAATCCGAATCCAACATTTACCACAATACAAGTTAAGACACTG
AAAGTTTCACGGAACTGTTGGGAGCTGGCATTCCCACATCTGGTCGTCGAATCCCGTGGGAGGCTCTATCTAGTTGTTTA
TGACCGACATTGTATACGCGATATGTGCCTCTTCAAGATGGATTTCTCAAGACTTGAATGGTGTTCAGTGGATAGGCTTT
ATGATCAGATCTTTTTTGTGGGTAAACTGCATTTCACGGCATCATATTGTGCTCGGCAGCTTGGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis