Browse Element(s) Details


Os.9125.1.S1_at

Description gb:AK099947.1
DB_XREF= gi:32985156
TID=Os.9125.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123C23, full insert sequence.
FL= gb:AK119888.1 gb:AK099947.1 gb:AK067789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5215011/11major surface like glycoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52100NANA3+29864798..29867877expressed protein
LOC_Os03g52110OsAffx.31867.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.22699.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.16451.1.A1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52190NANA3+29910874..29916837retrotransposon protein, putative, unclassified
LOC_Os03g52200NANA3+29917805..29920504retrotransposon protein, putative, unclassified
LOC_Os03g52210OsAffx.28175.1.S1_s_at11/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_at5/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_x_at4/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.27455.2.S1_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.47130.4.A1_x_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9125.1.S1_at--54--2631Chr03:29896667..29896691 (25 bp)
AACCGACTTCGGGTATGCTACTCTG
LOC_Os03g52150
Os.9125.1.S1_at--680--631Chr03:29896681..29896705 (25 bp)
ATGCTACTCTGCATGTGAGTTGTAC
LOC_Os03g52150
Os.9125.1.S1_at--502--4331Chr03:29896864..29896888 (25 bp)
CCATCTGCGGCTCGGAGATTGTGTA
LOC_Os03g52150
Os.9125.1.S1_at--367--6891Chr03:29896891..29896915 (25 bp)
GTATAATTGGCGATGTCCTATCCAT
LOC_Os03g52150
Os.9125.1.S1_at--110--7271Chr03:29896905..29896929 (25 bp)
GTCCTATCCATATTCATTTTCTCTT
LOC_Os03g52150
Os.9125.1.S1_at--561--10231Chr03:29896935..29896959 (25 bp)
TTTGGCCACCACTTTCCAATTGTAG
LOC_Os03g52150
Os.9125.1.S1_at--1152--311Chr03:29896961..29896985 (25 bp)
ATACGGGAAGTAGTGGCCCATTTCA
LOC_Os03g52150
Os.9125.1.S1_at--18--4291Chr03:29896994..29897018 (25 bp)
CCTGAAGATGGGTGCCTGGTGTATA
LOC_Os03g52150
Os.9125.1.S1_at--240--10171Chr03:29897015..29897039 (25 bp)
TATAAGCAGTGTTGGAGCGGGCTCT
LOC_Os03g52150
Os.9125.1.S1_at--969--3971Chr03:29897032..29897056 (25 bp)
CGGGCTCTGTGTGTTTAGGAAGTTA
LOC_Os03g52150
Os.9125.1.S1_at--1106--8651Chr03:29897164..29897188 (25 bp)
TGTGTGTTGTAATCCCATGACCCAT
LOC_Os03g52150
Target Sequence 
AACCGACTTCGGGTATGCTACTCTGCATGTGAGTTGTACAATACAGCATGTGGGGCGGGTCTTGATTGCTCGGACCAGAC
CCTGTTTAGCAAGAGGGAAGAAGAGGAAAAGGGTGTTCCGTGCACAGGATATGGCGAGAAGAAGTCTTTNTGGCTAATGA
CTATAACTTCCCCGGGCGTTTCTTCCCTCTGATATCTCCATCTGCGGCTCGGAGATTGTGTAAAGTATAATTGGCGATGT
CCTATCCATATTCATTTTCTCTTTTCTTTTTGGCCACCACTTTCCAATTGTAGGATACGGGAAGTAGTGGCCCATTTCAC
CTGGGCACCTGAAGATGGGTGCCTGGTGTATAAGCAGTGTTGGAGCGGGCTCTGTGTGTTTAGGAAGTTAGTCTGACTGG
AAGGAGGGTGGAGTGAGAAGCTGGAGGCGGGCGGTAGATTTATTTTTTACCTTTTTTTTTTGTCGCGTCAGAGTTAGCGG
AGGAATGTAAAGTGTAATGTGTGTTGTAATCCCATGACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis