Browse Element(s) Details


OsAffx.13465.1.S1_at

Description tigr:9631.m05103
TID=OsAffx.13465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LytB protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5218011/114-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52190NANA3+29910874..29916837retrotransposon protein, putative, unclassified
LOC_Os03g52200NANA3+29917805..29920504retrotransposon protein, putative, unclassified
LOC_Os03g52210OsAffx.28175.1.S1_s_at11/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_at5/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_x_at4/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.27455.2.S1_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.47130.4.A1_x_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52230Os.12620.1.S1_at2/113+29927051..29928490Dynamin-2B, putative
LOC_Os03g52220NANA3+29930378..29930908NA

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Gene Ontology Classification
GO idTypeName
GO:0019288biological_processisopentenyl diphosphate biosynthesis, mevalonate-independent pathway
GO:0046677biological_processresponse to antibiotic
GO:0009570cellular_componentchloroplast stroma
GO:0046429molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13465.1.S1_at--616--2951Chr03:29909034..29909058 (25 bp)
AAGGCCAACTTGATGGGTCCAGCTC
LOC_Os03g52180
OsAffx.13465.1.S1_at--846--6251Chr03:29909023..29909047 (25 bp)
GATGGGTCCAGCTCAACAAAAGAGA
LOC_Os03g52180
OsAffx.13465.1.S1_at--238--2251Chr03:29908908..29908932 (25 bp)
AAATTCAGATATGCTGTCTCTCCAG
LOC_Os03g52180
OsAffx.13465.1.S1_at--117--271Chr03:29908900..29908924 (25 bp)
ATATGCTGTCTCTCCAGGATTTGAC
LOC_Os03g52180
OsAffx.13465.1.S1_at--364--7931Chr03:29908884..29908908 (25 bp)
GGATTTGACCCTGATATTGACTTGG
LOC_Os03g52180
OsAffx.13465.1.S1_at--292--7071Chr03:29908585..29908609 (25 bp)
GTAAGTATGGTCTTGATCAGAACAA
LOC_Os03g52180
OsAffx.13465.1.S1_at--936--5471Chr03:29908553..29908577 (25 bp)
GAACATTTCGTCAGAGTCGGCACCA
LOC_Os03g52180
OsAffx.13465.1.S1_at--7--6111Chr03:29908540..29908564 (25 bp)
GAGTCGGCACCATTTGCAATGCTAC
LOC_Os03g52180
OsAffx.13465.1.S1_at--499--211Chr03:29908410..29908553 (25 bp)
ATTTGCAATGCTACTCAGGAAAGGC
LOC_Os03g52180
OsAffx.13465.1.S1_at--250--5351Chr03:29908356..29908380 (25 bp)
GAAGTTGACCTCATACTTGTCGTCG
LOC_Os03g52180
OsAffx.13465.1.S1_at--858--3551Chr03:29908345..29908369 (25 bp)
CATACTTGTCGTCGGAGGATGGAAC
LOC_Os03g52180
Target Sequence 
AAGGCCAACTTGATGGGTCCAGCTCAACAAAAGAGAAGTTCCTTAAGAAATTCAGATATGCTGTCTCTCCAGGATTTGAC
CCTGATATTGACTTGGAGAGAGTAGGCGTTGTGAATCAAACAACAATGCTTAAAGGAGAAACTAAAGAAATTGGAATACT
CATTGAGCAGACAATGATGAGTAAGTATGGTCTTGATCAGAACAACAAGCAAGAACATTTCGTCAGAGTCGGCACCATTT
GCAATGCTACTCAGGAAAGGCAGGATGCGATGTACAAATTGGTAGAGAAGGAAGTTGACCTCATACTTGTCGTCGGAGGA
TGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis