Browse Element(s) Details


Os.37894.1.S1_at

Description gb:AK064873.1
DB_XREF= gi:32974891
TID=Os.37894.1
CNT=70
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.37894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000J09, full insert sequence.
FL= gb:AK121561.1 gb:AK064873.1 gb:AK062113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5217011/114-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52190NANA3+29910874..29916837retrotransposon protein, putative, unclassified
LOC_Os03g52200NANA3+29917805..29920504retrotransposon protein, putative, unclassified
LOC_Os03g52210OsAffx.28175.1.S1_s_at11/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_at5/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_x_at4/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.27455.2.S1_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.47130.4.A1_x_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52230Os.12620.1.S1_at2/113+29927051..29928490Dynamin-2B, putative

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Gene Ontology Classification
GO idTypeName
GO:0019288biological_processisopentenyl diphosphate biosynthesis, mevalonate-independent pathway
GO:0046677biological_processresponse to antibiotic
GO:0009570cellular_componentchloroplast stroma
GO:0046429molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37894.1.S1_at--502--5471Chr03:29902118..29902142 (25 bp)
GAACTCAGTGGAATTCCGTCTTACT
LOC_Os03g52170
Os.37894.1.S1_at--278--5291Chr03:29901816..29901840 (25 bp)
GAAGGCCCTATCACAATCGGAGTTA
LOC_Os03g52170
Os.37894.1.S1_at--369--491Chr03:29901801..29901825 (25 bp)
ATCGGAGTTACTTCTGGCGCCTCAA
LOC_Os03g52170
Os.37894.1.S1_at--1146--4451Chr03:29901788..29901807 (20 bp)
GCCTCAACTCCGGACAAGGTTGTTG
LOC_Os03g52170
Os.37894.1.S1_at--517--6851Chr03:29901618..29901642 (25 bp)
GTTTGAGATCAAGCGCCAGGAAGTT
LOC_Os03g52170
Os.37894.1.S1_at--1061--3471Chr03:29901602..29901626 (25 bp)
CAGGAAGTTTTGCAGGCCGCGTAAA
LOC_Os03g52170
Os.37894.1.S1_at--937--6851Chr03:29901567..29901591 (25 bp)
GTTTGGTCACGGTAGCTGATGGCTT
LOC_Os03g52170
Os.37894.1.S1_at--530--5431Chr03:29901528..29901552 (25 bp)
GAACCAGTGCACAAGCGATGTCTGT
LOC_Os03g52170
Os.37894.1.S1_at--340--5271Chr03:29901492..29901516 (25 bp)
GAATGCTACGCTTTTAGGAGCGCAT
LOC_Os03g52170
Os.37894.1.S1_at--1024--5871Chr03:29901475..29901499 (25 bp)
GAGCGCATACTACGGCATGTGCTGA
LOC_Os03g52170
Os.37894.1.S1_at--358--4731Chr03:29901392..29901416 (25 bp)
GCTGTATCGGCTGTCATAACTTTCT
LOC_Os03g52170
Target Sequence 
GAACTCAGTGGAATTCCGTCTTACTGGATTGACAGTGAACAAAGGATTGGACCTGGAAACAAGATCAGCTACAAGTTAAA
TCATGGCGAGCTTGTCGAGAAAGAGAACTGGTTACCAGAAGGCCCTATCACAATCGGAGTTACTTCTGGCGCCTCAACTC
CGGACAAGGTTGTTGAGGATGCGTTACAGAAGGTGTTTGAGATCAAGCGCCAGGAAGTTTTGCAGGCCGCGTAAATTTTC
ATCAGGTTTGGTCACGGTAGCTGATGGCTTGGTGAAGGTTAATAGAACCAGTGCACAAGCGATGTCTGTACAGTAGTGAA
GAATGCTACGCTTTTAGGAGCGCATACTACGGCATGTGCTGAGATTTACGTAGTATGTTGGGGGCAAATGTTGTAATCAA
TTATCACACGAAGAACAGTTGCTGTATCGGCTGTCATAACTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis