Browse Element(s) Details


Os.18983.1.S1_at

Description gb:BM419374
DB_XREF= gi:18386175
DB_XREF=R012H09
CLONE=R012H09
TID=Os.18983.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18983 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T04781 (A.thaliana) T04781 hypothetical protein F10M10.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g521807/114-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52190NANA3+29910874..29916837retrotransposon protein, putative, unclassified
LOC_Os03g52200NANA3+29917805..29920504retrotransposon protein, putative, unclassified
LOC_Os03g52210OsAffx.28175.1.S1_s_at11/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_at5/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_x_at4/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.27455.2.S1_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.47130.4.A1_x_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52230Os.12620.1.S1_at2/113+29927051..29928490Dynamin-2B, putative
LOC_Os03g52220NANA3+29930378..29930908NA

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Gene Ontology Classification
GO idTypeName
GO:0019288biological_processisopentenyl diphosphate biosynthesis, mevalonate-independent pathway
GO:0046677biological_processresponse to antibiotic
GO:0009570cellular_componentchloroplast stroma
GO:0046429molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18983.1.S1_at--1129--691NONE
ATGAGATCATGAGACACCTGTTGCT
NONE
Os.18983.1.S1_at--247--5991NONE
GAGACACCTGTTGCTGGCGCACAGA
NONE
Os.18983.1.S1_at--786--8391Chr03:29907526..29907550 (25 bp)
GGCGCACAGAGATGAGCAAGCACAA
LOC_Os03g52180
Os.18983.1.S1_at--863--5651Chr03:29907498..29907522 (25 bp)
GACATGAGATGCTAGTATGGTCAGA
LOC_Os03g52180
Os.18983.1.S1_at--206--9791Chr03:29907456..29907480 (25 bp)
TAAGATCGGCTGATTGAGAATTTGA
LOC_Os03g52180
Os.18983.1.S1_at--502--5216Chr09:16730988..16731010 (22 bp)
GAATTTGAGACTTGAGTTCATAGCA
NONE
Os.18983.1.S1_at--432--10551Chr03:29907423..29907447 (25 bp)
TTCATAGCATGAACTATTTGTGCAT
LOC_Os03g52180
Os.18983.1.S1_at--483--10251Chr03:29907407..29907431 (25 bp)
TTTGTGCATATTTGGTGATCTGGGA
LOC_Os03g52180
Os.18983.1.S1_at--674--7751Chr03:29907394..29907418 (25 bp)
GGTGATCTGGGAAGGCATACTGATA
LOC_Os03g52180
Os.18983.1.S1_at--547--6471NONE
GATAACTTTGAGTTGCACCCTTGCA
NONE
Os.18983.1.S1_at--1071--6651NONE
GTTGCACCCTTGCAGGGCGAATGTA
NONE
Target Sequence 
ATGAGATCATGAGACACCTGTTGCTGGCGCACAGAGATGAGCAAGCACAAGGAGACATGAGATGCTAGTATGGTCAGATA
AAGATACAGAAGAAATAAGATCGGCTGATTGAGAATTTGAGACTTGAGTTCATAGCATGAACTATTTGTGCATATTTGGT
GATCTGGGAAGGCATACTGATAACTTTGAGTTGCACCCTTGCAGGGCGAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis