Browse Element(s) Details


Os.12620.1.S1_at

Description gb:AK065091.1
DB_XREF= gi:32975109
TID=Os.12620.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001L23, full insert sequence.
FL= gb:AK065091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1058010/11hypothetical protein
LOC_Os03g522302/11Dynamin-2B, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein
LOC_Os10g10540Os.46713.1.A1_at7/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10540Os.56042.1.S1_at1/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10550OsAffx.18205.1.S1_at10/1110+5597449..5598286hypothetical protein
LOC_Os10g10550OsAffx.29033.1.S1_at1/1110+5597449..5598286hypothetical protein
LOC_Os10g10560OsAffx.18206.1.S1_x_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10560OsAffx.18206.1.S1_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10610OsAffx.18207.1.S1_at9/1110+5628870..5630712hypothetical protein
LOC_Os10g10620OsAffx.20662.1.S1_at11/1110+5632724..5633362pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006896biological_processGolgi to vacuole transport
GO:0005794cellular_componentGolgi apparatus
GO:0003924molecular_functionGTPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12620.1.S1_at--1018--531NONE
ATCCCTGCTGTTTGGGTGCTGATGA
NONE
Os.12620.1.S1_at--884--8812Chr10:5608333..5608357 (25 bp)
TGTTGGTGTGCGGTTGCTCCTATGC
LOC_Os10g10580
Os.12620.1.S1_at--963--2251Chr10:5609018..5609041 (24 bp)
AAATATCCATGCAATTTTCGGCTTG
LOC_Os10g10580
Os.12620.1.S1_at--557--3132Chr10:5609029..5609053 (25 bp)
AATTTTCGGCTTGCTAAATGGTGAA
LOC_Os10g10580
Os.12620.1.S1_at--102--6354Chr10:5609178..5609202 (25 bp)
GATGCTCAGCAGTAAGCTCTCATAC
LOC_Os10g10580
Os.12620.1.S1_at--97--4813Chr10:5609193..5609217 (25 bp)
GCTCTCATACTCAATTAGGTTCCAG
LOC_Os10g10580
Os.12620.1.S1_at--726--5472Chr10:5609237..5609261 (25 bp)
GAACTTGCGACCATTGTGATTGTGA
LOC_Os10g10580
Os.12620.1.S1_at--614--10413Chr10:5609266..5609290 (25 bp)
TTATTTTGGTGCTGTTGTGCTTCTG
LOC_Os10g10580
Os.12620.1.S1_at--280--4751Chr10:5609305..5609329 (25 bp)
GCTGTTGTGCTTTTGGTCATTGCGA
LOC_Os10g10580
Os.12620.1.S1_at--788--7131Chr10:5609320..5609344 (25 bp)
GTCATTGCGATGCTGATGCTGTGAA
LOC_Os10g10580
Os.12620.1.S1_at--742--3832Chr10:5609360..5609384 (25 bp)
CTGCTGTTGCTCTCGATGTAGGAGG
LOC_Os10g10580
Target Sequence 
ATCCCTGCTGTTTGGGTGCTGATGAGATGGATGTGGCTGGATGTTGTTGGTGTGCGGTTGCTCCTATGCGGGAAGAGCTG
CCAGCTGCAGTGGATGAAAAATATCCATGCAATTTTCGGCTTGCTAAATGGTGAAACAATTAGAGGACCAGAAAGAGGCA
GCAAGGAAGAATGAAGAAGAAACTGAGAAGCTGAGGCAGCAAGGAAGTGAAATCCAAAGCTTCGTTCGCTCCTTGATTGG
CAGCAAGTTTGCATCATTAGATGCTCAGCAGTAAGCTCTCATACTCAATTAGGTTCCAGATGATATTTTGGTGACACTGA
ACTTGCGACCATTGTGATTGTGAGATGTTATTTTGGTGCTGTTGTGCTTCTGGCCGTTGTGCTGTTGCTGTTGTGCTTTT
GGTCATTGCGATGCTGATGCTGTGAAGCTATTGCAGATGTGCTGCTGTTGCTCTCGATGTAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis