Browse Element(s) Details


OsAffx.20662.1.S1_at

Description gb:NM_195212.1
DB_XREF= gi:37531783
TID=OsAffx.20662.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029P16.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1062011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10610OsAffx.18207.1.S1_at9/1110+5628870..5630712hypothetical protein
LOC_Os10g10620OsAffx.20662.1.S1_at11/1110+5632724..5633362pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g10630OsAffx.18208.1.S1_x_at11/1110+5640314..5640979pectinesterase inhibitor domain containing protein
LOC_Os10g10640NANA10+5642147..5646868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10650NANA10+5650824..5651258transposon protein, putative, unclassified
LOC_Os10g10660NANA10+5652920..5655727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10664NANA10+5657592..5658080hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20662.1.S1_at--830--8331Chr10:5633090..5633114 (25 bp)
GGCGGCGAAGCTCCGGGCGTTCTCG
LOC_Os10g10620
OsAffx.20662.1.S1_at--1122--6711Chr10:5633072..5633096 (25 bp)
GTTCTCGGCCCGCATCAATGATCTG
LOC_Os10g10620
OsAffx.20662.1.S1_at--739--9451Chr10:5633068..5633092 (25 bp)
TCGGCCCGCATCAATGATCTGCTCG
LOC_Os10g10620
OsAffx.20662.1.S1_at--655--8531Chr10:5633022..5633046 (25 bp)
TGGACGCCGCGCTGAAGGACTGCAA
LOC_Os10g10620
OsAffx.20662.1.S1_at--88--5311Chr10:5633009..5633033 (25 bp)
GAAGGACTGCAAGAGCACCATCTCC
LOC_Os10g10620
OsAffx.20662.1.S1_at--337--5731Chr10:5633005..5633029 (25 bp)
GACTGCAAGAGCACCATCTCCGACG
LOC_Os10g10620
OsAffx.20662.1.S1_at--339--1591Chr10:5632950..5632974 (25 bp)
AGCTCGGACAGCTCGACGCGGGCGC
LOC_Os10g10620
OsAffx.20662.1.S1_at--866--1051Chr10:5632894..5632918 (25 bp)
AGGTGGCATGTCTCGAATGTGCAGA
LOC_Os10g10620
OsAffx.20662.1.S1_at--494--9351Chr10:5632882..5632906 (25 bp)
TCGAATGTGCAGACGTGGCTCAGCG
LOC_Os10g10620
OsAffx.20662.1.S1_at--992--5751Chr10:5632838..5632862 (25 bp)
GACGTGCACCGATGGGTTCGAGGAA
LOC_Os10g10620
OsAffx.20662.1.S1_at--363--6111Chr10:5632755..5632779 (25 bp)
GAGTGAAGCAGCACACCAGCATCGC
LOC_Os10g10620
Target Sequence 
GGCGGCGAAGCTCCGGGCGTTCTCGGCCCGCATCAATGATCTGCTCGCCCAAGGCGGCGCCGCTCGCGTGGACGCCGCGC
TGAAGGACTGCAAGAGCACCATCTCCGACGCCGGCGACCTGGCAAGGCAGTCGTCGGCGGAGCTCGGACAGCTCGACGCG
GGCGCCGCCGCGGCCGGCGTGAGCAGCAGGCAGGCGAGGTGGCATGTCTCGAATGTGCAGACGTGGCTCAGCGCGGCCAT
CACCGACGAGGGGACGTGCACCGATGGGTTCGAGGAAGCCGGAGAAGCCGCGGCGGGGTCGCCCGCCGGGAAGGAGGTCG
CCGCCGGGGTGGCGAGAGTGAAGCAGCACACCAGCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis