Browse Element(s) Details


OsAffx.18207.1.S1_at

Description tigr:9638.m00936
TID=OsAffx.18207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g106109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10610OsAffx.18207.1.S1_at9/1110+5628870..5630712hypothetical protein
LOC_Os10g10620OsAffx.20662.1.S1_at11/1110+5632724..5633362pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g10630OsAffx.18208.1.S1_x_at11/1110+5640314..5640979pectinesterase inhibitor domain containing protein
LOC_Os10g10640NANA10+5642147..5646868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10650NANA10+5650824..5651258transposon protein, putative, unclassified
LOC_Os10g10660NANA10+5652920..5655727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18207.1.S1_at--703--3911Chr10:5630632..5630656 (25 bp)
CTGGCCAACACGTTCTTCACCATTG
LOC_Os10g10610
OsAffx.18207.1.S1_at--1145--5951Chr10:5630591..5630615 (25 bp)
GAGAAGAGTTGTACCGAGACTACGA
LOC_Os10g10610
OsAffx.18207.1.S1_at--1001--10771NONE
TTGTACCGAGACTACGATGATGGCT
NONE
OsAffx.18207.1.S1_at--1139--6292Chr10:5630245..5630624 (25 bp)
GATGATGGCTCTTCTCGAAACCTCT
NONE
OsAffx.18207.1.S1_at--1121--2351Chr10:5630196..5630220 (25 bp)
AAACCTCTCTTCATCCGATGGTGAA
LOC_Os10g10610
OsAffx.18207.1.S1_at--748--3451Chr10:5630159..5630183 (25 bp)
CAGTCTGGCATTGGTGGCCCGATTA
LOC_Os10g10610
OsAffx.18207.1.S1_at--528--10851Chr10:5630149..5630173 (25 bp)
TTGGTGGCCCGATTACAGGAAACTC
LOC_Os10g10610
OsAffx.18207.1.S1_at--257--931NONE
AGGAAACTCGGGAGGCACTGGCCAA
NONE
OsAffx.18207.1.S1_at--751--8011Chr10:5628989..5629011 (23 bp)
GGAGGCACTGGCCAACATGCTGCTC
LOC_Os10g10610
OsAffx.18207.1.S1_at--333--3532Chr08:12683144..12683164 (21 bp)
CATGCTGCTCCCAAATATCGCTCTA
NONE
OsAffx.18207.1.S1_at--790--3751Chr10:5628954..5628978 (25 bp)
CTCTACGACGCACCCTGACAAGGAG
LOC_Os10g10610
Target Sequence 
CTGGCCAACACGTTCTTCACCATTGGATGAAGAGAGGTTTCGAGAAGAGTTGTACCGAGACTACGATGATGGCTCTTCTC
GAAACCTCTCTTCATCCGATGGTGAAGGAGGTGCCGGCCAGTCTGGCATTGGTGGCCCGATTACAGGAAACTCGGGAGGC
ACTGGCCAACATGCTGCTCCCAAATATCGCTCTACGACGCACCCTGACAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis