Browse Element(s) Details


OsAffx.18206.1.S1_x_at

Description tigr:9638.m00931
TID=OsAffx.18206.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative ripening-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1056011/11pectinesterase inhibitor domain containing protein
LOC_Os10g107001/11Plant invertase/pectin methylesterase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein
LOC_Os10g10540Os.46713.1.A1_at7/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10540Os.56042.1.S1_at1/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10550OsAffx.18205.1.S1_at10/1110+5597449..5598286hypothetical protein
LOC_Os10g10550OsAffx.29033.1.S1_at1/1110+5597449..5598286hypothetical protein
LOC_Os10g10560OsAffx.18206.1.S1_x_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10560OsAffx.18206.1.S1_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18206.1.S1_x_at--455--4511Chr10:5600196..5600220 (25 bp)
GCGGTACCCGGACGTCTGCTACGAC
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--160--3651Chr10:5600082..5600106 (25 bp)
CTTCTCCGCACGCGTCAAGGACATG
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--174--5732Chr10:14354074..14354093 (20 bp)
GACTGCGCGAGCACCATCTCGGCGG
NONE
OsAffx.18206.1.S1_x_at--357--3731Chr10:5599948..5599972 (25 bp)
CTAACCTGGCGAAGCGGTCGTCGGC
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--1016--1571Chr10:5599921..5599945 (25 bp)
AGCTCACACGGCTGGACGCGGACAC
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--34--1951Chr10:5599898..5599922 (25 bp)
ACGGCCGCCTCAACGGAGACGTCGA
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--867--1051Chr10:5599850..5599874 (25 bp)
AGGTGGCAGCTCTCCAACGCGAAGA
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--352--9212Chr10:5674043..5674067 (25 bp)
TCCAACGCGAAGACGTGGCTCAGCG
LOC_Os10g10700
OsAffx.18206.1.S1_x_at--162--6311Chr10:5599809..5599833 (25 bp)
GATGACGAACGAAGGGACGTGCTCA
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--355--2711Chr10:5599798..5599822 (25 bp)
AAGGGACGTGCTCAGACGGGTTCGA
LOC_Os10g10560
OsAffx.18206.1.S1_x_at--696--4071Chr10:5599714..5599738 (25 bp)
CGAGCGTGACGCAGCACACCAGCAA
LOC_Os10g10560
Target Sequence 
GCGGTACCCGGACGTCTGCTACGACTCCCTCCTCCCCTACGCCTCCACGTTCCAGACCAGCCACGTCAAGCTCGCCGTCG
CCGCGGCCGACGTCGCCGCCGCCCACCTCCGCGCCTTCTCCGCACGCGTCAAGGACATGCTCCTCCACCGCGGCGGCGGC
TCGGAGGAAGCCGCGGCCAGCAGCGGTGGTGGCGCGGCTCGCGTGGACGCCGTGCTGCACGACTGCGCGAGCACCATCTC
GGCGGCGGCTAACCTGGCGAAGCGGTCGTCGGCGGAGCTCACACGGCTGGACGCGGACACGGCCGCCTCAACGGAGACGT
CGACGTCCGGCGGGAGCAGGCAGGCGAGGTGGCAGCTCTCCAACGCGAAGACGTGGCTCAGCGCCGCGATGACGAACGAA
GGGACGTGCTCAGACGGGTTCGAGGACGCCGGCGCTGCCGCCACGGCGTCGCCGGCCGGGAAGGAGGTCGCCGCCGGCGT
GGCGAGCGTGACGCAGCACACCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18206.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis