Browse Element(s) Details


OsAffx.18205.1.S1_at

Description tigr:9638.m00930
TID=OsAffx.18205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1055010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein
LOC_Os10g10540Os.46713.1.A1_at7/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10540Os.56042.1.S1_at1/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10550OsAffx.18205.1.S1_at10/1110+5597449..5598286hypothetical protein
LOC_Os10g10550OsAffx.29033.1.S1_at1/1110+5597449..5598286hypothetical protein
LOC_Os10g10560OsAffx.18206.1.S1_x_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10560OsAffx.18206.1.S1_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18205.1.S1_at--139--2171Chr10:5597479..5597503 (25 bp)
ACACCACTGGTTGCCTCCGAGCGGC
LOC_Os10g10550
OsAffx.18205.1.S1_at--662--1671NONE
AGCCGTCGCCCGAGCGAGATTTGGA
NONE
OsAffx.18205.1.S1_at--1035--991Chr10:5598180..5598204 (25 bp)
AGGATACGAATGATTGTGTTGCCAA
LOC_Os10g10550
OsAffx.18205.1.S1_at--830--5271Chr10:5598187..5598211 (25 bp)
GAATGATTGTGTTGCCAATGGTGCA
LOC_Os10g10550
OsAffx.18205.1.S1_at--1029--8651Chr10:5598194..5598218 (25 bp)
TGTGTTGCCAATGGTGCAACCCCTA
LOC_Os10g10550
OsAffx.18205.1.S1_at--853--9191Chr10:5598199..5598223 (25 bp)
TGCCAATGGTGCAACCCCTAGTTTA
LOC_Os10g10550
OsAffx.18205.1.S1_at--928--8591Chr10:5598205..5598229 (25 bp)
TGGTGCAACCCCTAGTTTAGCAGCA
LOC_Os10g10550
OsAffx.18205.1.S1_at--1070--5151Chr10:5598209..5598233 (25 bp)
GCAACCCCTAGTTTAGCAGCAGTTA
LOC_Os10g10550
OsAffx.18205.1.S1_at--995--2611Chr10:5598211..5598235 (25 bp)
AACCCCTAGTTTAGCAGCAGTTATT
LOC_Os10g10550
OsAffx.18205.1.S1_at--32--4311Chr10:5598215..5598239 (25 bp)
CCTAGTTTAGCAGCAGTTATTCAAA
LOC_Os10g10550
OsAffx.18205.1.S1_at--94--5031Chr10:5598227..5598251 (25 bp)
GCAGTTATTCAAACAATGGCTAATG
LOC_Os10g10550
Target Sequence 
ACACCACTGGTTGCCTCCGAGCGGCCACCGCTCCTCCCGCCGCGCGTCGCTGATGCCGCCGACGCCGCCGTACGCTGCTC
CTCCAGCCGTCGCCCGAGCGAGATTTGGAAGGATACGAATGATTGTGTTGCCAATGGTGCAACCCCTAGTTTAGCAGCAG
TTATTCAAACAATGGCTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis