Browse Element(s) Details


OsAffx.8412.1.S1_at

Description tigr:9638.m00928
TID=OsAffx.8412.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1053011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10510OsAffx.18204.1.S1_at11/1110+5560629..5561988hypothetical protein
LOC_Os10g10510Os.6227.2.S1_x_at1/1110+5560629..5561988hypothetical protein
LOC_Os10g10520NANA10+5566285..5569075Zinc knuckle family protein
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein
LOC_Os10g10540Os.46713.1.A1_at7/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10540Os.56042.1.S1_at1/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10550OsAffx.18205.1.S1_at10/1110+5597449..5598286hypothetical protein
LOC_Os10g10550OsAffx.29033.1.S1_at1/1110+5597449..5598286hypothetical protein
LOC_Os10g10560OsAffx.18206.1.S1_x_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10560OsAffx.18206.1.S1_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8412.1.S1_at--133--5891Chr10:5583303..5583327 (25 bp)
GAGCGCAACGGCAGTGGTGCTAGGA
LOC_Os10g10530
OsAffx.8412.1.S1_at--181--5931Chr10:5583270..5583294 (25 bp)
GAGCAGCTTTGGTGGCAGGGCGTTG
LOC_Os10g10530
OsAffx.8412.1.S1_at--613--6171Chr10:5583236..5583260 (25 bp)
GAGGAGGTCTCGATGGGCCTCACAC
LOC_Os10g10530
OsAffx.8412.1.S1_at--1142--8011Chr10:5583234..5583258 (25 bp)
GGAGGTCTCGATGGGCCTCACACCT
LOC_Os10g10530
OsAffx.8412.1.S1_at--452--7151Chr10:5583230..5583254 (25 bp)
GTCTCGATGGGCCTCACACCTGGTG
LOC_Os10g10530
OsAffx.8412.1.S1_at--185--9391Chr10:5583227..5583251 (25 bp)
TCGATGGGCCTCACACCTGGTGCTG
LOC_Os10g10530
OsAffx.8412.1.S1_at--563--1771Chr10:5583213..5583237 (25 bp)
ACCTGGTGCTGCCAATGCCTATAGG
LOC_Os10g10530
OsAffx.8412.1.S1_at--852--3891Chr10:5583211..5583235 (25 bp)
CTGGTGCTGCCAATGCCTATAGGTC
LOC_Os10g10530
OsAffx.8412.1.S1_at--1094--7771Chr10:5583209..5583233 (25 bp)
GGTGCTGCCAATGCCTATAGGTCCC
LOC_Os10g10530
OsAffx.8412.1.S1_at--665--591Chr10:5583199..5583223 (25 bp)
ATGCCTATAGGTCCCCCATCAATGA
LOC_Os10g10530
OsAffx.8412.1.S1_at--937--10591Chr10:5583146..5583170 (25 bp)
TTCTCCTCCGCTAGTGACGAGAGGA
LOC_Os10g10530
Target Sequence 
GAGCGCAACGGCAGTGGTGCTAGGAGGGAGCGAGAGCAGCTTTGGTGGCAGGGCGTTGGGCAAGGAGGAGGAGGTCTCGA
TGGGCCTCACACCTGGTGCTGCCAATGCCTATAGGTCCCCCATCAATGACCCCTCCGTTCGCCGCACCGCCAACACCTTC
TCCTCCGCTAGTGACGAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis