Browse Element(s) Details


OsAffx.18204.1.S1_at

Description tigr:9638.m00926
TID=OsAffx.18204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1051011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10490OsAffx.8414.1.S1_at11/1110+5537020..5538433retrotransposon protein, putative, unclassified
LOC_Os10g10500Os.28056.1.S1_at11/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10500Os.49542.1.S1_at1/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10510OsAffx.18204.1.S1_at11/1110+5560629..5561988hypothetical protein
LOC_Os10g10510Os.6227.2.S1_x_at1/1110+5560629..5561988hypothetical protein
LOC_Os10g10520NANA10+5566285..5569075Zinc knuckle family protein
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18204.1.S1_at--928--2791Chr10:5560695..5560719 (25 bp)
AAGATGCAATCCTACATTGGAGCAG
LOC_Os10g10510
OsAffx.18204.1.S1_at--424--9251Chr10:5560704..5560728 (25 bp)
TCCTACATTGGAGCAGGATACCTGC
LOC_Os10g10510
OsAffx.18204.1.S1_at--341--5011Chr10:5560716..5560888 (25 bp)
GCAGGATACCTGCAGGTACCTGGTA
LOC_Os10g10510
OsAffx.18204.1.S1_at--61--6991Chr10:5561527..5561551 (25 bp)
GTACCCATGATACCTGGTACTTGGG
LOC_Os10g10510
OsAffx.18204.1.S1_at--621--312Chr10:5561536..5561560 (25 bp)
ATACCTGGTACTTGGGTAGCCTGGA
LOC_Os10g10510
OsAffx.18204.1.S1_at--1113--1611Chr10:5561619..5561643 (25 bp)
AGCGGCGAATCCGATAGTCGTCGAG
LOC_Os10g10510
OsAffx.18204.1.S1_at--644--4111Chr10:5561624..5561648 (25 bp)
CGAATCCGATAGTCGTCGAGGTGGA
LOC_Os10g10510
OsAffx.18204.1.S1_at--1091--7211Chr10:5561638..5561662 (25 bp)
GTCGAGGTGGAACAGCCGATGAGAA
LOC_Os10g10510
OsAffx.18204.1.S1_at--685--7792Chr10:5561763..5561787 (25 bp)
GGTCCTGAGCCGACAGGAGAAGCTC
LOC_Os10g10510
OsAffx.18204.1.S1_at--591--1431Chr10:5561780..5561804 (25 bp)
AGAAGCTCCCGCCAGGGAACGCCTT
LOC_Os10g10510
OsAffx.18204.1.S1_at--796--1071Chr10:5561921..5561945 (25 bp)
AGGGACAACGGCAGGCACCGGCTCC
LOC_Os10g10510
Target Sequence 
AAGATGCAATCCTACATTGGAGCAGGATACCTGCAGGTACCTGGTACCCGTGATACCTGGTACCTGGTACCCATGATACC
TGGTACTTGGGTAGCCTGGAGGAGGAGGAGGCGGTGGCGAATCCGGTGGTCGGCGAGGCAGAGTGTGGAGGAGGAGGCAG
CGGCGAATCCGATAGTCGTCGAGGTGGAACAGCCGATGAGAAGACCAACGAGGGCGGGAAGCCAGAGCAGCGCGGTAAGG
GAGGCGAGCTTGAGGGCGACCCTTGCCGAGGCCGCGCCGTCATCGTCCTCCTCGGCGGCCGGGGTCCTGAGCCGACAGGA
GAAGCTCCCGCCAGGGAACGCCTTCCCCGGCGCCAGCAGCGGCCTCCGTGTCCCGCTACCACTCTCCCTCTTGTTCACCG
CACCCGTCGCCGAGCTTCTCGTCGTCGCCTCGACCCCCGCGGAGGTGGGGCAACGGCGACAGGGACAACGGCAGGCACCG
GCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis