Browse Element(s) Details


OsAffx.29033.1.S1_at

Description tigr:9636.m00394
TID=OsAffx.29033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g046804/11hypothetical protein
LOC_Os10g105501/11hypothetical protein
LOC_Os06g372241/11Ent-kaurene oxidase, putative, expressed
LOC_Os11g075601/11hypothetical protein
LOC_Os09g092701/11Dihydroflavonol-4-reductase, putative
LOC_Os09g202701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04630Os.34139.1.S1_at6/118+2304024..2308749EF hand family protein, expressed
LOC_Os08g04640OsAffx.29032.1.S1_at11/118+2314093..2314650expressed protein
LOC_Os08g04650Os.53290.1.S1_at11/118+2316203..2317294pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g04660OsAffx.16828.1.S1_at11/118+2323968..2324393hypothetical protein
LOC_Os08g04670OsAffx.5705.1.S1_at11/118+2325991..2326566expressed protein
LOC_Os08g04680OsAffx.29033.1.S1_at4/118+2329913..2330820hypothetical protein
LOC_Os08g04690NANA8+2332315..2333011expressed protein
LOC_Os08g04700OsAffx.29034.1.S1_at11/118+2335365..2335901hypothetical protein
LOC_Os08g04710OsAffx.29035.1.S1_at11/118+2337777..2338343hypothetical protein
LOC_Os08g04720OsAffx.22848.4.S1_at2/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.4.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.3.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04730NANA8+2351089..2354941retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0006118biological_processelectron transport
GO:0009641biological_processshade avoidance
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009759biological_processindole glucosinolate biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0010114biological_processresponse to red light
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0009707cellular_componentchloroplast outer membrane
GO:0004497molecular_functionmonooxygenase activity
GO:0010241molecular_functionent-kaurene oxidase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29033.1.S1_at--1001--7331Chr08:2330439..2330463 (25 bp)
GTGCAGGGACACCTACTACGCGCAG
LOC_Os08g04680
OsAffx.29033.1.S1_at--681--4652Chr10:20098246..20098337 (24 bp)
GCGTCTGGTCTTGGAGAGCTCGTCA
NONE
OsAffx.29033.1.S1_at--847--8051Chr08:2330225..2330249 (25 bp)
GGAGAGCTCGTCATTTGCCAAGCAG
LOC_Os08g04680
OsAffx.29033.1.S1_at--213--211Chr08:2330216..2330237 (22 bp)
ATTTGCCAAGCAGTGACCTGGTGCC
LOC_Os08g04680
OsAffx.29033.1.S1_at--418--5831Chr08:2328076..2328095 (20 bp)
GACCTGGTGCCAGTTTTTTACGATT
NONE
OsAffx.29033.1.S1_at--40--10238Chr11:14131377..14131401 (25 bp)
TTTACGATTTCAACCCGCGGAGGTG
NONE
OsAffx.29033.1.S1_at--284--2724Chr10:9433907..9433927 (21 bp)
ATAGGTGCCGGTTTTAGCACTATCG
NONE
OsAffx.29033.1.S1_at--235--6811Chr08:2328014..2328038 (25 bp)
GTTTTAGCACTATCGGCACCTATAG
NONE
OsAffx.29033.1.S1_at--600--82526Chr12:15282557..15282581 (25 bp)
GGCACCTATAGTGGCGACACCTATT
NONE
OsAffx.29033.1.S1_at--318--8071Chr08:2327959..2327981 (23 bp)
GGAGCAAAGTCCACATGGTCAGGAT
NONE
OsAffx.29033.1.S1_at--832--7111Chr08:2327690..2327711 (22 bp)
GTCAGGATATCCAAAAAGCACGTAT
NONE
Target Sequence 
GTGCAGGGACACCTACTACGCGCAGGCCCGGAGCTCCACCGTCGCCGCCATGAACCTCCTGGCGGAGTGCTCGCTCGGGC
AGCTCGGCGGGGAGTACGCCGCCGCGGCGGACGCCATCAAGGCCTGCCGGGACGCGCAGTCGAAGCTCCAGTCGCCGGCG
ATCTACGGCCTCGCCGTCTCCGACCTGATGGTGGCGGCGCTGGCGTCTGGTCTTGGAGAGCTCGTCATTTGCCAAGCAGT
GACCTGGTGCCAGTTTTTTACGATTTCAACCCGCGGAGGTGGAAAAAGGCCTATAGGTGCCGGTTTTAGCACTATCGGCA
CCTATAGTGGCGACACCTATTTGATGTTTTGTAGTAGTGGGAGCAAAGTCCACATGGTCAGGATATCCAAAAAGCACGTA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis