Browse Element(s) Details


OsAffx.29035.1.S1_at

Description tigr:9636.m00397
TID=OsAffx.29035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0471011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04640OsAffx.29032.1.S1_at11/118+2314093..2314650expressed protein
LOC_Os08g04650Os.53290.1.S1_at11/118+2316203..2317294pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g04660OsAffx.16828.1.S1_at11/118+2323968..2324393hypothetical protein
LOC_Os08g04670OsAffx.5705.1.S1_at11/118+2325991..2326566expressed protein
LOC_Os08g04680OsAffx.29033.1.S1_at4/118+2329913..2330820hypothetical protein
LOC_Os08g04690NANA8+2332315..2333011expressed protein
LOC_Os08g04700OsAffx.29034.1.S1_at11/118+2335365..2335901hypothetical protein
LOC_Os08g04710OsAffx.29035.1.S1_at11/118+2337777..2338343hypothetical protein
LOC_Os08g04720OsAffx.22848.4.S1_at2/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.4.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.3.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04730NANA8+2351089..2354941retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04740OsAffx.16829.1.S1_s_at11/118+2359067..2359707expressed protein
LOC_Os08g04750NANA8+2362664..2363416retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29035.1.S1_at--310--751Chr08:2338172..2338196 (25 bp)
ATGTACGACACGTGCAGGGACGCGC
LOC_Os08g04710
OsAffx.29035.1.S1_at--1061--9931Chr08:2338169..2338193 (25 bp)
TACGACACGTGCAGGGACGCGCTCG
LOC_Os08g04710
OsAffx.29035.1.S1_at--1153--8471Chr08:2338138..2338162 (25 bp)
TGGCGGACCCGTTGAGCGACCACGA
LOC_Os08g04710
OsAffx.29035.1.S1_at--1006--5811Chr08:2338133..2338157 (25 bp)
GACCCGTTGAGCGACCACGACGTGA
LOC_Os08g04710
OsAffx.29035.1.S1_at--575--1031Chr08:2338036..2338060 (25 bp)
AGGTCAGGAACAACAGGTCTCTCCC
LOC_Os08g04710
OsAffx.29035.1.S1_at--488--1131Chr08:2337985..2338009 (25 bp)
AGTGCGCGGTGGACTACTCGACGGC
LOC_Os08g04710
OsAffx.29035.1.S1_at--770--7591Chr08:2337948..2337972 (25 bp)
GGGCAGCGTCGTGGACAAGCTCGAC
LOC_Os08g04710
OsAffx.29035.1.S1_at--650--4451Chr08:2337907..2337931 (25 bp)
GCCTCGCCGGCGACTATTTGAACGG
LOC_Os08g04710
OsAffx.29035.1.S1_at--330--3931Chr08:2337900..2337924 (25 bp)
CGGCGACTATTTGAACGGGCTCATC
LOC_Os08g04710
OsAffx.29035.1.S1_at--42--8331Chr08:2337883..2337907 (25 bp)
GGCTCATCGACGTCGAGAACTGCAG
LOC_Os08g04710
OsAffx.29035.1.S1_at--267--9611Chr08:2337880..2337904 (25 bp)
TCATCGACGTCGAGAACTGCAGGGA
LOC_Os08g04710
Target Sequence 
ATGTACGACACGTGCAGGGACGCGCTCGCCGGCGTGGCGGACCCGTTGAGCGACCACGACGTGACCGTCTACGCGCTCGC
GGCGGCGCACGGCGCGGCGGCGTCGGCGGAGGCCACCATGGGCGCCGCCATCGACGAGGTCAGGAACAACAGGTCTCTCC
CCGGCGACGAGAGGGACGCGTACATGGAGTGCGCGGTGGACTACTCGACGGCGCTGCACGCCATGGGCAGCGTCGTGGAC
AAGCTCGACGGCTGCAGCTTCGACGGCCTCGCCGGCGACTATTTGAACGGGCTCATCGACGTCGAGAACTGCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis