Browse Element(s) Details


Os.8553.1.S1_at

Description gb:AK070777.1
DB_XREF= gi:32980800
TID=Os.8553.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070C11, full insert sequence.
FL= gb:AK070777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5213011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52090Os.33998.1.S1_at11/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52090Os.52198.3.S1_at1/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52100NANA3+29864798..29867877expressed protein
LOC_Os03g52110OsAffx.31867.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.22699.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.16451.1.A1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8553.1.S1_at--261--5071Chr03:29882030..29882054 (25 bp)
GCAGCTTCAACGTTTCATCGATCAG
LOC_Os03g52130
Os.8553.1.S1_at--258--9391Chr03:29882047..29882071 (25 bp)
TCGATCAGCAACAAGGCATCTCCAG
LOC_Os03g52130
Os.8553.1.S1_at--654--1691Chr03:29882070..29882094 (25 bp)
AGCCACTGGCCATGTTGGCTCAGAG
LOC_Os03g52130
Os.8553.1.S1_at--915--1311Chr03:29882861..29882885 (25 bp)
AGAGGCTAGACGACTACTACAAGAG
LOC_Os03g52130
Os.8553.1.S1_at--1077--91Chr03:29882897..29882921 (25 bp)
ATTACTTTGGTCTGATCGAGGGCCC
LOC_Os03g52130
Os.8553.1.S1_at--47--531Chr03:29882911..29882935 (25 bp)
ATCGAGGGCCCTGCAAGACAGAAGA
LOC_Os03g52130
Os.8553.1.S1_at--175--3111Chr03:29883013..29883037 (25 bp)
AATATGCATGCCTAAATTCTGGAAG
LOC_Os03g52130
Os.8553.1.S1_at--354--651Chr03:29883064..29883088 (25 bp)
ATGCAGTCTTGTGCTGCTTATCTGA
LOC_Os03g52130
Os.8553.1.S1_at--873--4891Chr03:29883079..29883103 (25 bp)
GCTTATCTGAGAGGCATGCTTTCTT
LOC_Os03g52130
Os.8553.1.S1_at--78--4991Chr03:29883092..29883116 (25 bp)
GCATGCTTTCTTGAAGGTCATCCTT
LOC_Os03g52130
Os.8553.1.S1_at--1012--551Chr03:29883111..29883135 (25 bp)
ATCCTTTGTAGTGCCGGTACTCTGG
LOC_Os03g52130
Target Sequence 
GCAGCTTCAACGTTTCATCGATCAGCAACAAGGCATCTCCAGCCACTGGCCATGTTGGCTCAGAGGAACGGCATTAGCAG
GAGGGGCCTTCTCACTTTCCTCACCTCCACTGCAGCCATACCTGAGGCTGGTGAATCAAGAAAGGCTCTACTGCAAGAGT
ATCTGAAGAAATCAAAGGAAAACAAAGAAAAGAACGACAAAGAGAGGCTAGACGACTACTACAAGAGGAATTACAGGGAT
TACTTTGGTCTGATCGAGGGCCCTGCAAGACAGAAGAATGAAGATGAGCTTACAGAGTCGGAGAAAGGAATTCTCGAATG
GCTTGACAAGAACAAATAGTCAGAAGCTCAGGATAATATGCATGCCTAAATTCTGGAAGGTTTTCTTACAGTTATTGCTT
TAGTTATGCAGTCTTGTGCTGCTTATCTGAGAGGCATGCTTTCTTGAAGGTCATCCTTTGTAGTGCCGGTACTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis