Browse Element(s) Details


OsAffx.31867.1.S1_x_at

Description tigr:9640.m02368
TID=OsAffx.31867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2485011/11hypothetical protein
LOC_Os06g225201/11retrotransposon protein, putative, unclassified
LOC_Os09g031101/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g262001/11hypothetical protein
LOC_Os01g578001/11retrotransposon protein, putative, unclassified
LOC_Os03g521101/11retrotransposon protein, putative, unclassified
LOC_Os08g197301/11hypothetical protein
LOC_Os06g077301/11hypothetical protein
LOC_Os08g294501/11hypothetical protein
LOC_Os11g254001/11retrotransposon protein, putative, unclassified
LOC_Os07g243601/11retrotransposon protein, putative, unclassified
LOC_Os06g189501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24800Os.50222.1.S1_at11/1112+14230259..14232243nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os12g24810OsAffx.19810.4.S1_s_at11/1112+14239428..14239862hypothetical protein
LOC_Os12g24820NANA12+14241592..14244778hypothetical protein
LOC_Os12g24830OsAffx.22699.1.S1_x_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24830Os.52731.1.S1_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24840NANA12+14248691..14250919retrotransposon protein, putative, unclassified
LOC_Os12g24850OsAffx.31867.1.S1_x_at11/1112+14251902..14252111hypothetical protein
LOC_Os12g24859NANA12+14254495..14255190NA
LOC_Os12g24870OsAffx.19810.3.S1_at11/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.2.S1_at5/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.1.S1_x_at3/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.640.1.S1_x_at1/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24880OsAffx.29384.2.S1_at11/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24880OsAffx.29384.1.S1_at2/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24890OsAffx.21465.1.S1_x_at2/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.38172.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.43567.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31867.1.S1_x_at--673--7871Chr12:14252054..14252078 (25 bp)
GGTTCCGTTAATGGCAAGGTGTTGG
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--1140--9271Chr12:14252051..14252075 (25 bp)
TCCGTTAATGGCAAGGTGTTGGGAT
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--1155--4231Chr12:14252050..14252074 (25 bp)
CCGTTAATGGCAAGGTGTTGGGATT
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--71--9771Chr12:14252046..14252070 (25 bp)
TAATGGCAAGGTGTTGGGATTGACT
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--372--3593Chr07:13859293..13859316 (24 bp)
CATTGAAGAAAACGTCATGCCGATT
LOC_Os07g24360
OsAffx.31867.1.S1_x_at--878--1411Chr12:14252010..14252034 (25 bp)
AGAAAACGTCATGCCGATTGATCCA
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--283--7131Chr12:14252003..14252027 (25 bp)
GTCATGCCGATTGATCCAGAGAAGT
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--11--1354Chr12:14251959..14251983 (25 bp)
AGAGTTTGAAGCAACGTTGCAGCAT
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--398--6671Chr12:14251944..14251968 (25 bp)
GTTGCAGCATGCATGGGATCAGTTC
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--725--10731Chr12:14251943..14251967 (25 bp)
TTGCAGCATGCATGGGATCAGTTCC
LOC_Os12g24850
OsAffx.31867.1.S1_x_at--682--9057Chr10:13235420..13235439 (20 bp)
TGCATGGGATCAGTTCCTGAACTCA
LOC_Os10g26200
Target Sequence 
GGTTCCGTTAATGGCAAGGTGTTGGGATTGACTGACATCATTGAAGAAAACGTCATGCCGATTGATCCAGAGAAGTTCAC
GCCTGAGCAGAAGGAAGAGTTTGAAGCAACGTTGCAGCATGCATGGGATCAGTTCCTGAACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31867.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis