Browse Element(s) Details


Os.50222.1.S1_at

Description gb:AK120176.1
DB_XREF= gi:37989799
TID=Os.50222.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033B20, full insert sequence.
FL= gb:AK120176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2480011/11nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24770OsAffx.20628.1.S1_at2/1112+14203381..14205926retrotransposon protein, putative, unclassified
LOC_Os12g24770OsAffx.20628.2.S1_x_at1/1112+14203381..14205926retrotransposon protein, putative, unclassified
LOC_Os12g24770OsAffx.10496.1.S1_at1/1112+14203381..14205926retrotransposon protein, putative, unclassified
LOC_Os12g24780NANA12+14209390..14213744retrotransposon protein, putative, unclassified
LOC_Os12g24790NANA12+14214154..14218261retrotransposon protein, putative, LINE subclass, expressed
LOC_Os12g24800Os.50222.1.S1_at11/1112+14230259..14232243nine-cis-epoxycarotenoid dioxygenase4, putative, expressed
LOC_Os12g24810OsAffx.19810.4.S1_s_at11/1112+14239428..14239862hypothetical protein
LOC_Os12g24820NANA12+14241592..14244778hypothetical protein
LOC_Os12g24830OsAffx.22699.1.S1_x_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24830Os.52731.1.S1_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24840NANA12+14248691..14250919retrotransposon protein, putative, unclassified
LOC_Os12g24850OsAffx.31867.1.S1_x_at11/1112+14251902..14252111hypothetical protein
LOC_Os12g24859NANA12+14254495..14255190NA
LOC_Os12g24870OsAffx.19810.3.S1_at11/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.2.S1_at5/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.1.S1_x_at3/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.640.1.S1_x_at1/1112+14256443..14258594SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50222.1.S1_at--451--1371Chr12:14230796..14230820 (25 bp)
AGAGCCTTGAGTTCGGTGTCATCCA
LOC_Os12g24800
Os.50222.1.S1_at--775--8591Chr12:14230759..14230783 (25 bp)
TGGTCGCAAAAATCGCTATGGCTAC
LOC_Os12g24800
Os.50222.1.S1_at--376--9751Chr12:14230727..14230751 (25 bp)
TAAGTGGTCCGTTGCCCAAGATCAA
LOC_Os12g24800
Os.50222.1.S1_at--1021--6371Chr12:14230680..14230704 (25 bp)
GATCTCGTCGGCTCTGGTGATTGCA
LOC_Os12g24800
Os.50222.1.S1_at--971--7351Chr12:14230643..14230667 (25 bp)
GTGACTTTGGTCTAGGGTGCTTTGC
LOC_Os12g24800
Os.50222.1.S1_at--532--6691Chr12:14230602..14230626 (25 bp)
GTTCCAGACAACATCGACGGGTATG
LOC_Os12g24800
Os.50222.1.S1_at--33--7471Chr12:14230554..14230578 (25 bp)
GTGTGCTACACCCATGAAGAGGACA
LOC_Os12g24800
Os.50222.1.S1_at--251--5331Chr12:14230470..14230494 (25 bp)
GAAGTGCAACTTCCTAGTCGTATCC
LOC_Os12g24800
Os.50222.1.S1_at--817--10051Chr12:14230456..14230480 (25 bp)
TAGTCGTATCCCCTATGGCTTTCAT
LOC_Os12g24800
Os.50222.1.S1_at--676--10371Chr12:14230426..14230450 (25 bp)
TTTTGTCAAACAGGCCGAACTTCTC
LOC_Os12g24800
Os.50222.1.S1_at--159--10191Chr12:14230264..14230288 (25 bp)
TATAGTCTGGTTGTCATTTCACATC
LOC_Os12g24800
Target Sequence 
AGAGCCTTGAGTTCGGTGTCATCCACCAAGGTTATGTTGGTCGCAAAAATCGCTATGGCTACTTTGGTGTAAGTGGTCCG
TTGCCCAAGATCAAGGGGATAAGAAAGCTTGACTTTGATCTCGTCGGCTCTGGTGATTGCACGGTTGGACGTCGTGACTT
TGGTCTAGGGTGCTTTGCTGGGGAACCATTTTTTGTTCCAGACAACATCGACGGGTATGGAAACGAGGATAGTGGTTATG
TGGTGTGCTACACCCATGAAGAGGACACCGGAGAGAGTTGGTTTGTGGTGATGGATGCAAAGTCTCCAGAGCTAGACATT
GTTGCAGAAGTGCAACTTCCTAGTCGTATCCCCTATGGCTTTCATGGTATTTTTGTCAAACAGGCCGAACTTCTCGCACA
ACAATAAGCATGTTTGTGAAAAACCTTACCCACTACTCTACGTATAAAGATAATACTTCATAACTTCATAAGCGAGATCT
GCTACAAATGTACTTTCCAGCATTTGATTTAGAATGGTCATAAGAGAAGTATTATAGTCTGGTTGTCATTTCACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis