Browse Element(s) Details


Os.39964.1.S1_at

Description gb:CR289577
DB_XREF= gi:44676143
DB_XREF=CR289577
CLONE=y610f05p3
TID=Os.39964.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39964 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48532 (A.thaliana) T48532 hypothetical protein T22P22.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g521207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52090Os.33998.1.S1_at11/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52090Os.52198.3.S1_at1/113+29840154..29861477Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed
LOC_Os03g52100NANA3+29864798..29867877expressed protein
LOC_Os03g52110OsAffx.31867.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.22699.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.16451.1.A1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39964.1.S1_at--1101--2551Chr03:29880848..29880872 (25 bp)
AACGGCCAGAACTCTACGATGTGCT
LOC_Os03g52120
Os.39964.1.S1_at--34--2551Chr03:29880857..29880881 (25 bp)
AACTCTACGATGTGCTTCCTGTTTG
LOC_Os03g52120
Os.39964.1.S1_at--907--10651Chr03:29880872..29880896 (25 bp)
TTCCTGTTTGCTCGAAAGTTTGCTC
LOC_Os03g52120
Os.39964.1.S1_at--521--9351Chr03:29880883..29880907 (25 bp)
TCGAAAGTTTGCTCCAAGTGCGTTG
LOC_Os03g52120
Os.39964.1.S1_at--354--5871Chr03:29880908..29880932 (25 bp)
GAGCCATTGTTAGAGTTAGCACCCA
LOC_Os03g52120
Os.39964.1.S1_at--610--5031Chr03:29880926..29880950 (25 bp)
GCACCCACTGTGCTTGGTTTTGGTT
LOC_Os03g52120
Os.39964.1.S1_at--1090--451Chr03:29881062..29881086 (25 bp)
ATCTCTGCTCCATTGTGTTATATAC
LOC_Os03g52120
Os.39964.1.S1_at--182--251Chr03:29881218..29881242 (25 bp)
ATATCAGAGTTAACGTGTACCACAT
NONE
Os.39964.1.S1_at--1149--10051Chr03:29881305..29881329 (25 bp)
TAGTGTACCAAATGGGCTTGTCCAA
NONE
Os.39964.1.S1_at--251--4871Chr03:29881320..29881344 (25 bp)
GCTTGTCCAAAGGTTACGGGCTACG
NONE
Os.39964.1.S1_at--267--6371Chr03:29881394..29881418 (25 bp)
GATCCAGTGCGGTTGCTATTGCGAC
NONE
Target Sequence 
AACGGCCAGAACTCTACGATGTGCTTCCTGTTTGCTCGAAAGTTTGCTCCAAGTGCGTTGGAGCCATTGTTAGAGTTAGC
ACCCACTGTGCTTGGTTTTGGTTGATGTATGGTTGAACAGGTGCACCCCCTGTAATTTTGATACGAGATCATTGTAGGAT
TACATGGGTAGAGAAGTGGGCTTATCTTGATAGATGAAAGCCTGCACGTCGNCCATCTCTGCTCCATTGTGTTATATACA
CAAACTTGTACTGTTTTGTACAGTAACGTGACATTGAGTCACATGAGGACTTCTTATCTTAGAATATTANCCTGTATTTT
TTGTTTATCAGAAGTCATACAGTAAATTTTTGAAGAAAAAAATTCATCCAATATCAGAGTTAACGTGTACCACATAAAAG
TGTGAGGCAAAAATAGAAATTCAGTGCTGGAAGTGTAACATCAAACTGCAGTTGGTGTAGTGTACCAAATGGGCTTGTCC
AAAGGTTACGGGCTACGGAGTAGTACTGGAGTTGTTTGTGTGACTTGTATGTTGTATCCGGATTGAGATCCAGTGCGGTT
GCTATTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis