Browse Element(s) Details


Os.37894.2.S1_at

Description gb:AK105543.1
DB_XREF= gi:32990752
TID=Os.37894.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H12, full insert sequence.
FL= gb:AK105543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5216011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52110OsAffx.31867.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.22699.1.S1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52110OsAffx.16451.1.A1_x_at1/113+29869214..29875010retrotransposon protein, putative, unclassified
LOC_Os03g52120Os.39964.1.S1_at7/113+29878264..29881159expressed protein
LOC_Os03g52130Os.8553.1.S1_at11/113+29881917..29883258expressed protein
LOC_Os03g52140OsAffx.25687.1.S1_at11/113+29883434..29884131hypothetical protein
LOC_Os03g52150Os.9125.1.S1_at11/113+29887682..29897244major surface like glycoprotein, putative, expressed
LOC_Os03g52160Os.37894.2.S1_at11/113+29899492..29901650regulatory protein, putative, expressed
LOC_Os03g52170Os.37894.1.S1_at11/113+29900734..299044644-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180OsAffx.13465.1.S1_at11/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52180Os.18983.1.S1_at7/113+29907321..299093424-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
LOC_Os03g52190NANA3+29910874..29916837retrotransposon protein, putative, unclassified
LOC_Os03g52200NANA3+29917805..29920504retrotransposon protein, putative, unclassified
LOC_Os03g52210OsAffx.28175.1.S1_s_at11/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_at5/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210OsAffx.28175.1.S1_x_at4/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.27455.2.S1_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed
LOC_Os03g52210Os.47130.4.A1_x_at1/113+29921632..29925050retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37894.2.S1_at--618--1511Chr03:29900795..29900819 (25 bp)
AGCAGGACGTGCTCAACGACATGAA
LOC_Os03g52160
Os.37894.2.S1_at--173--4911Chr03:29900876..29900900 (25 bp)
GCTTCAGCGGCTTCTGCCAGGACAG
LOC_Os03g52160
Os.37894.2.S1_at--367--9111Chr03:29900938..29900962 (25 bp)
TGCTGCCGGACCATGCGCGCCAAGG
LOC_Os03g52160
Os.37894.2.S1_at--1088--2131Chr03:29901092..29901116 (25 bp)
ACAGAATGGTCGTGAGCTAACAGCT
LOC_Os03g52160
Os.37894.2.S1_at--319--2971Chr03:29901096..29901120 (25 bp)
AATGGTCGTGAGCTAACAGCTGCTA
LOC_Os03g52160
Os.37894.2.S1_at--1008--3571Chr03:29901208..29901232 (25 bp)
CATATGTGGCATATCAAGATTGGTT
LOC_Os03g52160
Os.37894.2.S1_at--613--10691Chr03:29901276..29901300 (25 bp)
TTGCCATATATATACAGGGAGTCCT
LOC_Os03g52160
Os.37894.2.S1_at--935--3571Chr03:29901280..29901304 (25 bp)
CATATATATACAGGGAGTCCTGCAT
LOC_Os03g52160
Os.37894.2.S1_at--683--4811Chr03:29901309..29901333 (25 bp)
GCTCTATCAAATAGTACTAGCTAAC
LOC_Os03g52160
Os.37894.2.S1_at--99--10051Chr03:29901320..29901344 (25 bp)
TAGTACTAGCTAACAAATTGGGTGA
LOC_Os03g52160
Os.37894.2.S1_at--683--3271Chr03:29901333..29901356 (24 bp)
CAAATTGGGTGATATTTATACCGAG
LOC_Os03g52160
Target Sequence 
AGCAGGACGTGCTCAACGACATGAAGCGCCGCGGCGNNNTCCNCCGCCTCGGCGTCCGCGCCCGCGTCCTCGACACGGCG
CGCTTCAGCGGCTTCTGCCAGGACAGCCGCGACGCCCGCGAGGTCGCCACCGTGCACGCCAACTGCTGCCGGACCATGCG
CGCCAAGGTCGCCGACCTCGCGGCCGTCCTCGCCGCGGCGCGGCGNCGCCTNCGACGGCGACGGCGCGTCGCCGNTGNCT
CAGGTGGCCGCCGNACTNCCAGTGTGTCAAGTCATGGGAGTNANGGCGACACACACACNCACAGAATGGTCGTGAGCTAA
CAGCTGCTANTACTGATTATTTTTTTTTTGTTCAAAAGNTGAAGANCAATACTACTNCANGTATGAAAGTTNCAGAGNGA
ANTGGAATTTTATAACAACATATGTGGCATATCAAGATTGGTTNTGAACTTAATGTTATACATAGGGAACCCTGCATTTN
TTGNACTTGCCATATATATACAGGGAGTCCTGCATTTGNGCTCTATCAAATAGTACTAGCTAACAAATTGGGTGATATTT
ATACCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37894.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis