Browse Element(s) Details


Os.9038.1.S1_at

Description gb:AK070526.1
DB_XREF= gi:32980550
TID=Os.9038.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060F11, full insert sequence.
FL= gb:AK070526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3794010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9038.1.S1_at--980--1091Chr02:22925958..22925982 (25 bp)
AGTGGATGACACTTTCTGCTATGGT
LOC_Os02g37940
Os.9038.1.S1_at--605--6351Chr02:22925918..22925942 (25 bp)
GATGCCATCTCTAGTTCATGGACAT
LOC_Os02g37940
Os.9038.1.S1_at--845--8871Chr02:22925868..22925892 (25 bp)
TGATGTGGCCTCTTGGAATCTTGAA
LOC_Os02g37940
Os.9038.1.S1_at--258--5291Chr02:22925782..22925806 (25 bp)
GAATGGTTCTTACAGCAGGCCTTAT
LOC_Os02g37940
Os.9038.1.S1_at--268--5371Chr02:22925459..22925483 (25 bp)
GAAGAGCTACATTCCTGGCCAAAAG
LOC_Os02g37940
Os.9038.1.S1_at--858--2431Chr02:22925439..22925463 (25 bp)
AAAAGCAAGCTGCTATCGCCCGCAA
LOC_Os02g37940
Os.9038.1.S1_at--155--1051Chr02:22925395..22925419 (25 bp)
AGAGTTAACCCACAGCAGCTTAGGC
LOC_Os02g37940
Os.9038.1.S1_at--944--6571Chr02:22925344..22925368 (25 bp)
GATTCCTATTTCCACCACTTTGTGA
LOC_Os02g37940
Os.9038.1.S1_at--928--5351Chr02:22925285..22925309 (25 bp)
GAAGATGTCCTCTACACTGGTGGTC
LOC_Os02g37940
Os.9038.1.S1_at--993--6231Chr02:22925255..22925279 (25 bp)
GATGGATGGCGTCACTGGTTACAAC
LOC_Os02g37940
Os.9038.1.S1_at--641--1231Chr02:22925109..22925129 (21 bp)
AGATTTTCTTCATACTCCTTCCTTA
NONE
Target Sequence 
AGTGGATGACACTTTCTGCTATGGTGGGAAAGCAAGTTTTGATGCCATCTCTAGTTCATGGACATCTTCAAAAGAGCGTC
CAGTATTAAGTGATGTGGCCTCTTGGAATCTTGAAGATTTTCGCAGATGGGCAAGAGAAATGCCTGCTAGTGAAAGAGTT
TCATGGGCAATTGGAGGAATGGTTCTTACAGCAGGCCTTATATTTATCAGTAAACGGAAGAGCTACATTCCTGGCCAAAA
GCAAGCTGCTATCGCCCGCAATGTGAGAAAGCTGGAATCAAGAGTTAACCCACAGCAGCTTAGGCGAAATTAGGAATGCG
TAGGTAGCATGGATTCCTATTTCCACCACTTTGTGATTCTTATATTTGAATCTGCAATGAATTTACTGTTGAAGATGTCC
TCTACACTGGTGGTCAGATAGATGGATGGCGTCACTGGTTACAACCTCCTTTGTCATCCTTNCGTAGAAGAGCAGAAGAG
ATCTATTAATTCTTGTTCAGGTTATTTCTGTCTGCAGGATTTATAGATTTGCTTGAACATATGTATATAGTTTTGGAATG
GAATCTTCAGAGATTTTCTTCATACTCCTTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis