Browse Element(s) Details


OsAffx.24623.1.S1_x_at

Description tigr:9630.m03643
TID=OsAffx.24623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to peroxisomal copper-containing amine oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g379907/11Phenylethylamine oxidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24623.1.S1_x_at--200--3191NONE
CAATCAGGTGGTAGAGGCAATGCGT
NONE
OsAffx.24623.1.S1_x_at--1109--10011NONE
TAGAGGCAATGCGTGACTGTGACCC
NONE
OsAffx.24623.1.S1_x_at--938--6191Chr02:22950096..22950119 (24 bp)
GAGGCAATGCGTGACTGTGACCCTT
LOC_Os02g37990
OsAffx.24623.1.S1_x_at--1112--931Chr02:22950095..22950119 (25 bp)
AGGCAATGCGTGACTGTGACCCTTC
LOC_Os02g37990
OsAffx.24623.1.S1_x_at--487--9611NONE
TCATCTGCACGCCATTGGATTGTTA
NONE
OsAffx.24623.1.S1_x_at--584--471NONE
ATCTGCACGCCATTGGATTGTTAGG
NONE
OsAffx.24623.1.S1_x_at--103--5091Chr02:22949980..22950090 (25 bp)
GCACGCCATTGGATTGTTAGGAACA
LOC_Os02g37990
OsAffx.24623.1.S1_x_at--850--7031Chr02:22949921..22949945 (25 bp)
GTACAAGCTCGTACCTGGTTCAAGC
LOC_Os02g37990
OsAffx.24623.1.S1_x_at--47--8591Chr02:22949906..22949930 (25 bp)
TGGTTCAAGCTGTCTTCCACTGGCC
LOC_Os02g37990
OsAffx.24623.1.S1_x_at--21--1531Chr02:22949841..22949865 (25 bp)
AGCATAACCTTTGGGTTACATCGTT
LOC_Os02g37990
OsAffx.24623.1.S1_x_at--1144--3531Chr02:22949839..22949863 (25 bp)
CATAACCTTTGGGTTACATCGTTCA
LOC_Os02g37990
Target Sequence 
CAATCAGGTGGTAGAGGCAATGCGTGACTGTGACCCTTCATCTGCACGCCATTGGATTGTTAGGAACACAAGGACTGTAA
ATCGTACTGGACAACCAACAGGGTACAAGCTCGTACCTGGTTCAAGCTGTCTTCCACTGGCCCTGCCTGAGGCGAAATTC
CTGAGAAGAGCTGGATTTTTAAAGCATAACCTTTGGGTTACATCGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24623.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis