Browse Element(s) Details


Os.55236.1.S1_at

Description gb:AK107707.1
DB_XREF= gi:32992916
TID=Os.55236.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D05, full insert sequence.
FL= gb:AK107707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3797011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein
LOC_Os02g37990OsAffx.24623.1.S1_x_at7/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g37990OsAffx.24623.1.S1_at6/112+22949717..22950559Phenylethylamine oxidase precursor, putative
LOC_Os02g38000Os.20341.2.S1_at1/112+22951916..22956828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55236.1.S1_at--1141--8611Chr02:22937804..22937828 (25 bp)
TGGTGTGTGTTCTTCCATGGCCGGC
LOC_Os02g37970
Os.55236.1.S1_at--792--3911Chr02:22937783..22937807 (25 bp)
CGGCCTGAGTGTCCTTCTTGAGACA
LOC_Os02g37970
Os.55236.1.S1_at--9--311Chr02:22937697..22937721 (25 bp)
ATAGCCACCCAGAGACGATGTCCTC
LOC_Os02g37970
Os.55236.1.S1_at--596--5651Chr02:22937326..22937350 (25 bp)
GACAGAGCGTTCTGCAGCGTGGATT
LOC_Os02g37970
Os.55236.1.S1_at--1076--9471Chr02:22937316..22937340 (25 bp)
TCTGCAGCGTGGATTGCCGGTGCAA
LOC_Os02g37970
Os.55236.1.S1_at--736--7771Chr02:22937298..22937322 (25 bp)
GGTGCAAGCAGATCTTCATGGACGA
LOC_Os02g37970
Os.55236.1.S1_at--964--7531Chr02:22937187..22937211 (25 bp)
GTGGCTTCGCGTACTGATCGATCGA
LOC_Os02g37970
Os.55236.1.S1_at--63--5251Chr02:22937164..22937188 (25 bp)
GAATCATCGATCAGCCCAGCCGTAC
LOC_Os02g37970
Os.55236.1.S1_at--94--1832Chr04:29629532..29629979 (25 bp)
ACGCGCGCGCGCACGTAGATTAATT
NONE
Os.55236.1.S1_at--195--5051Chr02:22937097..22937121 (25 bp)
GCAGAAGATATCAAGCACGACGATT
LOC_Os02g37970
Os.55236.1.S1_at--722--351Chr02:22937033..22937057 (25 bp)
ATAATTTATTATTCACTCGCCAATG
LOC_Os02g37970
Target Sequence 
TGGTGTGTGTTCTTCCATGGCCGGCCTGAGTGTCCTTCTTGAGACACACAAGAACGATCACCNNNNCAACATGAGGCCTC
CCCAAATCATCAGCAAGGCCACCCTCCATAGCCACCCAGAGACGATGTCCTCCTCCTCTCCGGCGACTGCGACGACGGCG
ACGATGAGCTCCTTCTTGCAGCGCTGCTTCCTCTGCCGCAGGGAGCTCGCCGACGGCAAGGACATCTACATGTACAGAGG
GGACAGAGCGTTCTGCAGCGTGGATTGCCGGTGCAAGCAGATCTTCATGGACGAGGACGCCGCCGCCGNCGGCGGCAACT
GCGCCGCGGTGCGCGCCGGCCGGCGGCGGGCGGCCGTACCGCGCGAGCAAACCGGCGCCGGTGGCTTCGCGTACTGATCG
ATCGAATCATCGATCAGCCCAGCCGTACGCGCGCGCGCACGTAGATTAATTAGCACAAATGAAACGAAAAGCAGAAGATA
TCAAGCACGACGATTTGGGGAAGATCAAGATGCTTGATTCATCATATAATAATAATAATTTATTATTCACTCGCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis